Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq48326 132 5e-26 seq9079 127 2e-24 seq176411 89.7 5e-13 seq74841 87.8 2e-12 seq4323 87.8 2e-12 seq70405 84.2 2e-11 >seq48326 Length=57257 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | ||| | || ||||| || ||||| ||||| || Sbjct 53324 CCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAT 53265 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||| | ||||||||||| ||||| Sbjct 53264 AGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGA 53205 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||||| | ||| | |||||| | ||||||| Sbjct 53204 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACT 53145 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||||| ||||| || || || ||||||||||||||| Sbjct 53144 TCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATG 53097 Score = 114 bits (126), Expect = 1e-20 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||| ||||| |||||||| || ||| || || || ||||| || || ||| || Sbjct 52832 TCTTTCTGAATGTTGTAATCAGACAGCGTACGG---TCCTCAAGCTGCTTGCCGGCGAAG 52776 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 |||| |||||||| || ||||| || || ||||||||| |||||| ||||| | | Sbjct 52775 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 52716 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| || ||| ||||||| || | ||||| || || || || || ||| Sbjct 52715 TCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 52656 Query 127103 AAAATCTGCATG 127114 |||||||||||| Sbjct 52655 AAAATCTGCATG 52644 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||| || || || || || ||||||||||| || Sbjct 53522 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCC 53463 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || || || ||||||||| ||||||| ||| Sbjct 53462 GCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTC 53403 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | |||||| || | ||| | ||| ||||| |||||||| Sbjct 53402 ACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTC 53343 Query 127097 TTTACAAAAATCTGCATG 127114 || || ||||| |||||| Sbjct 53342 TTCACGAAAATTTGCATG 53325 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||||||||| ||| | || || ||| || | ||| || || Sbjct 53750 GTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGCTTGCCT 53691 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || || || || ||||||||||||||| |||||| ||| Sbjct 53690 GCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 53631 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| || ||| || || | ||| | || |||||||| || || Sbjct 53630 ACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 53571 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 53570 TTCACGAAGATCTGCAT 53554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| |||||| || | || |||||||| || || ||||| || Sbjct 53096 CCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 53037 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||| | |||||||| || || || Sbjct 53036 AGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGA 52977 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||| || | | |||| ||||| | || || Sbjct 52976 ATTCCCTCCTTGTCTTGGATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAAC 52918 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | || ||||| |||| ||| || ||||| ||||||||| || Sbjct 52917 TTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCATGCCT 52866 >seq9079 Length=83715 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||| || || ||||| || ||||||||||| || Sbjct 2682 GTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCC 2741 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || |||||||| || || || || ||||||||| |||||| |||| Sbjct 2742 GCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTG 2801 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| || ||||||||||| || | ||||| ||||| || || Sbjct 2802 ACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTC 2861 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||||||||||||| Sbjct 2862 TTGACAAAAATCTGCATG 2879 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 ||||| ||||| |||||||| || ||| || || || ||||| || || ||| || Sbjct 3372 TCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3431 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 |||| |||||||| || ||||| || || ||||||||| |||||| ||||| | | Sbjct 3432 ATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTT 3491 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | |||||| | ||| ||||||| || | ||||| || || || || || ||| Sbjct 3492 TCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACA 3551 Query 127103 AAAATCTGCATG 127114 |||||||||||| Sbjct 3552 AAAATCTGCATG 3563 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | ||||| |||||| |||| || |||||||| ||||| ||||| || Sbjct 2880 CCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAG 2939 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||| | |||||||| || || || Sbjct 2940 AGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGG 2999 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||| |||| | |||| ||||| | || || Sbjct 3000 ATACCCTCCTTGTCTTGGATCTT-TGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAAC 3058 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | ||||||||| |||| ||| || || || ||||||||| || Sbjct 3059 TTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATGCCT 3110 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | || | || || || || ||||||||||| ||| Sbjct 2424 CCACCGCGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 2483 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || || || |||| | ||||| || || || || Sbjct 2484 AGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGA 2543 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| |||||| ||| | | ||||| |||||| || ||| || Sbjct 2544 ATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACC 2603 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || || || |||||||| Sbjct 2604 TCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| ||||| ||||| || | || || || || |||||||| ||| Sbjct 3138 GTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCA 3197 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||| | |||||||| || || || || ||||||||||| ||| || ||| || Sbjct 3198 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTT-TGCTTT 3256 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| ||||| | || ||||| | || | ||| ||||| |||| ||| Sbjct 3257 TACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGT 3316 Query 127096 TTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 3317 CTTGACAAAGATCTGCATGCCT 3338 >seq176411 Length=6678 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||||||| | | ||||| || || | ||| || || Sbjct 4829 GTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 4888 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || || || || ||||||||||||||| |||||| ||| Sbjct 4889 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 4948 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || || |||||| | |||||| || | ||| | || |||||||| || || Sbjct 4949 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 5008 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 5009 TTAACGAAGATTTGCAT 5025 >seq74841 Length=4471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||||||| | ||||| || || | ||| || || Sbjct 3185 GTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 3126 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || || || || ||||||||||||||| |||||| ||| Sbjct 3125 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 3066 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || || |||||| | |||||| || | ||| | || |||||||| || || Sbjct 3065 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 3006 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || || |||||| || Sbjct 3005 TTAACGAAGATTTGCATGCCT 2985 >seq4323 Length=113087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||||||| | ||||| || || | ||| || || Sbjct 36926 GTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCT 36985 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| || || || || ||||||||||||||| |||||| ||| Sbjct 36986 GCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTC 37045 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || || |||||| | |||||| || | ||| | || |||||||| || || Sbjct 37046 ACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTC 37105 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || || |||||| || Sbjct 37106 TTAACGAAGATTTGCATGCCT 37126 >seq70405 Length=8866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/113 (77%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| ||| | ||||| ||| |||||||||||||||||| |||| | ||||| || | Sbjct 3216 TACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTG---A 3160 Query 146740 CTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || ||||| ||||||| |||||||| |||||||| ||| || ||||| Sbjct 3159 TTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTC 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474341267524160