Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq48326 100 3e-16 seq9079 95.1 1e-14 >seq48326 Length=57257 Score = 100 bits (110), Expect = 3e-16 Identities = 169/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||| || || ||||| || || || ||||| || || || || || Sbjct 53327 ATGCCACCGCGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 53268 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | || || | || ||||| ||| | || | || ||||| |||| Sbjct 53267 --GATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCG 53210 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || || || || ||| |||| ||| | |||||| | || Sbjct 53209 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCT 53150 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||||| || | ||||| ||||| || || || |||||||| ||||| ||| || Sbjct 53149 CGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCATGCCGCCAC 53090 Query 45349 CAA 45351 || Sbjct 53089 GAA 53087 >seq9079 Length=83715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| |||| | || || || || || || |||||||| || || || || Sbjct 2649 ATTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCA 2708 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||| || || | || | |||||||| || || Sbjct 2709 GACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGT 2768 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || |||||| |||| ||| | |||||| || |||| Sbjct 2769 GGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCG 2828 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||||| ||||| || || || |||||||| ||||| Sbjct 2829 ACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450900967596640