Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10089 95.1 1e-14 seq139282 93.3 5e-14 seq3624 91.5 2e-13 seq17548 87.8 2e-12 >seq10089 Length=115771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 175943 AGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAG 176002 || ||||| ||||| || || |||| || || ||||| ||||| ||| | | || Sbjct 72550 AGGCGCGTACCAAACTGGCCGATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCAACAAAG 72491 Query 176003 TCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGAC 176062 | | ||||| |||| || || | |||||| || |||||||||||||||||||| Sbjct 72490 TTCTGCGCCAGGTTGATGATGGTGGACATGAGGGACACCTCACCGTGATGGTAGGCCGAA 72431 Query 176063 TTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGG 176122 | || ||||| | |||||||||| |||||||| || || |||| || | Sbjct 72430 TGCTCGGCCACGGAACCCGCCAACTGGGCCACCTTGATTTCCCGCTTGTCATTGCGCTTA 72371 Query 176123 AAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCG 176167 ||||||| || | |||||| | ||| || ||||| |||||| Sbjct 72370 AAGCACGTGTAGAGGACCTTGCGCTGGCCCGGTTTGAGACCGTCG 72326 >seq139282 Length=14605 Score = 93.3 bits (102), Expect = 5e-14 Identities = 248/373 (66%), Gaps = 16/373 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| || | | ||| ||||| | |||| || || || || Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || ||||||| || ||| | | || || |||||||| || ||||||||||| Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCTTCAAAACCATCCATTTCCACTAAGAGTTGATTA 10599 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCA-TACC---ACCCGCACTGCGTTGCTTACC 12877 | |||||| || |||||| ||| | || ||| ||| |||| || || || Sbjct 10598 AGGGTTTGCTCTCGTTCA----TCGTGACCACCACCTAAACCAGCACCACGGTGACGCCC 10543 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACA---CGGTTGATTTTCACGGGCAACTTC 12934 ||||| || ||||| ||||| |||| ||||| || ||| || | | || || Sbjct 10542 TACGGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCTTA---GCTTGATC 10486 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| || || || || | |||||| ||||| |||||||| || ||||||| || | Sbjct 10485 AAACATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACC 10426 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 ||| || | | ||| || || |||| |||||| || | ||| || || ||||| | Sbjct 10425 CGAA-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTT 10367 Query 13054 TCCCCGTCCCTGG 13066 | || || || || Sbjct 10366 TACCGGTTCCCGG 10354 >seq3624 Length=53740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/447 (65%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||| || || || | || |||||||||||||| || ||| || || ||| Sbjct 4283 AACCGGTGCCGATTCCCTCTGCACCATTCACGAGAACCATGGGGAGCACCGGGATGTAGT 4342 Query 175806 AGTCTGGTTCAATCGCAC-GCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTC 175864 | || || ||||| || | | ||||||| ||| || | | || || || ||| Sbjct 4343 ACTCCGGCTCAAT-GCGCTGGTTGTCATCGTACAAGTACTCCAAGACTGGATCGTCCAAA 4401 Query 175865 GGATCAAAGATTTTACGAGCATCCTTGGTGA--GTTTTGTGAAGATGTACCTCGTTTGAG 175922 | || ||| ||| || | ||||| | | |||||||| || | | | Sbjct 4402 GTGGGAACGATGAGACGCGC--CAGGGGTGATAGCATGGTGAAGATATATCGAGGGCTGG 4459 Query 175923 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 175982 ||| || ||||||||| || | || ||||| ||||| ||||| || || |||| Sbjct 4460 CCGCGTCCTTGCCACCCTGCAGCCTTGTGCCAAACTGACCGATTGGCTGCAGCAGGTTGA 4519 Query 175983 TATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTT 176042 ||||||| ||||| | | | | | |||||| |||| || || | |||||| | | Sbjct 4520 TATTGTTGGAGCCGACAAAATTCTGCGCCAAGTTGATGATGGTCGACATTAGGGAGGCCT 4579 Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102 | |||||||| || || || | || ||||| || | |||| ||| || ||||| || | Sbjct 4580 CGCCGTGATGATACGCAGAATGCTCGGCCACGGACCCTGCCAGCTGGGCGACCTTAATTT 4639 Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162 | |||| ||| | || || | | | ||||| | |||| ||||| || | Sbjct 4640 CGCGCTTGTCGTTGCGCTTAAAACAAGTGAAGAGAACCTTGCGCTGTCCCGGCTTCAGCC 4699 Query 176163 CGTCGGCCATGTGTGCGATGGAACGCT 176189 |||| ||| | | ||| ||||||| Sbjct 4700 CGTCCACCAGGGACGGGATCGAACGCT 4726 >seq17548 Length=139630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 ||||| | ||| ||||| |||| | ||||| || ||||||||||| |||||||||||| Sbjct 1887 GGACACATGAGCGACCAGACACCATCTTCCTCCACGCGCTTCATGAACAGGTCTGGGATC 1946 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 116841 ||||| || | || | |||||| |||| ||| || | ||| || || | Sbjct 1947 CAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCCGTGTTCTTCTTCAGC 2006 Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 || | || || | ||| || |||||||| || |||||||||| Sbjct 2007 TCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACA 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612011132017440