Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq48326 134 2e-26 seq9079 122 1e-22 seq74841 105 8e-18 seq4323 105 8e-18 seq176411 102 9e-17 seq2125 95.1 1e-14 >seq48326 Length=57257 Score = 134 bits (148), Expect = 2e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || ||| || ||||| |||||||| || || ||||| || Sbjct 53084 CGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCG 53025 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || || | ||||||||||| | || | | ||||||| Sbjct 53024 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 52965 Query 46499 TCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| | ||| || || | | ||||||||| | ||| || |||| |||||| Sbjct 52964 TCTTGGATCTT-TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGAT 52906 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||| || || |||||||| ||||| Sbjct 52905 TGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||| || || |||||||| ||||| ||||| || Sbjct 53312 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCG 53253 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| || | |||||||| || | || | || |||||| Sbjct 53252 TCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTG 53193 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| || | || || || | ||||||| Sbjct 53192 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATG 53133 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || ||||| || ||||| Sbjct 53132 GTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || || || || |||| || ||||| ||||| || || Sbjct 53517 CTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAA 53458 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | ||||||||| ||| ||| ||| | | Sbjct 53457 GATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTT 53398 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| |||| || || |||| ||||| || ||||||||||| || || || Sbjct 53397 CTCAATCGTGTCACTCGGCTCGACCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCAC 53338 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 53337 GAAAATTTGCAT 53326 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||||||||| ||||| ||| | || || | ||||||||| || || Sbjct 53744 TCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAG 53685 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 53684 ATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 53625 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | || || |||| || ||||| ||||| || || || || || Sbjct 53624 TCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACG 53565 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 53564 AAGATCTGCATT 53553 Score = 105 bits (116), Expect = 8e-18 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | ||| || || | ||||| || || || || ||||| || | Sbjct 52870 TGCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAG 52811 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || ||| || ||||||||||||||||| |||| ||||||||||| | | Sbjct 52810 ACAGCGTACG---GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAG 52754 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || ||| ||||| | | | ||||| || | || | Sbjct 52753 GAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAA 52694 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||| ||||| ||||| || || || ||||| || ||||| Sbjct 52693 CTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 >seq9079 Length=83715 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || ||| || || || |||||||| || || ||||| || Sbjct 2892 CGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCG 2951 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || || | ||||||||||| | || | | ||||||| Sbjct 2952 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 3011 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| |||| || | | |||||| || | ||| || || | |||||| Sbjct 3012 TCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATC 3071 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| |||| || || || ||||| ||||| Sbjct 3072 GTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| || || || || |||| |||||||| ||||| || || Sbjct 3143 CTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTGTTTGCCAGCAAA 3202 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG- 46520 || | ||||||||||| | || | | ||||||||| |||||| | ||| || Sbjct 3203 GATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTT-TGCTTTTACGT 3261 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||||||| | ||| || |||| |||||| || ||||| |||| || || | Sbjct 3262 TCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGTCAAAGTCTTGA 3321 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 3322 CAAAGATCTGCAT 3334 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | || | ||| || || | ||||| || || || || ||||| || | Sbjct 3334 TGCCTCCACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAG 3393 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| || ||||||||||||||||| |||| ||||||||||| | | Sbjct 3394 ACAGCGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAG 3453 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || ||| ||||| | | | ||||| |||| || | Sbjct 3454 GAATTCCTTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAA 3513 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||| ||||| ||||| || || || ||||| || ||||| Sbjct 3514 CTTCGAGCGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||||||||| ||||||||| |||| || | ||||||||| || || Sbjct 2460 TCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAG 2519 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 2520 ATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 2579 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | || || || | || ||||| ||||| || || || || || Sbjct 2580 TCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCACG 2639 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 2640 AAGATCTGCATT 2651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || || ||||| |||| || ||||| ||||| || || Sbjct 2687 CTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCTAGCTGTTTGCCCGCAAA 2746 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | | ||||||||| ||| || ||||| | Sbjct 2747 GATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 2806 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || | || || || | |||||||||||| || || || || || || Sbjct 2807 TTCAATGGTGTCACTAGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGAC 2866 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 2867 AAAAATCTGCAT 2878 >seq74841 Length=4471 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| |||||||| |||| || | ||||||||| || || Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 3060 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | |||||||| | || || |||| || ||||| ||||| || || || ||||| Sbjct 3059 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 3000 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 2999 AAGATTTGCAT 2989 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 2952 CTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 2893 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | || | || || |||||| Sbjct 2892 AATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCC 2853 >seq4323 Length=113087 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| |||||||| |||| || | ||||||||| || || Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 37051 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | |||||||| | || || |||| || ||||| ||||| || || || ||||| Sbjct 37052 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 37111 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 37112 AAGATTTGCAT 37122 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 37159 CTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 37218 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | || | || || |||||| Sbjct 37219 AATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCC 37258 >seq176411 Length=6678 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| |||| |||||||| |||| || | ||||||||| || || Sbjct 4835 TCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 4894 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||||| ||| || ||| | | Sbjct 4895 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATTT 4954 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | |||||||| | || || |||| || ||||| ||||| || || || ||||| Sbjct 4955 TTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTAACG 5014 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 5015 AAGATTTGCAT 5025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 5065 CTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 5124 Query 46462 TATCAAGCGCTGCTGG 46477 || | ||||||||| Sbjct 5125 AATAAGACGCTGCTGG 5140 >seq2125 Length=82343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| |||||||| || || |||||| | Sbjct 75964 CGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCA 76023 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || |||||||||||||| || |||| ||||||||||||| ||| Sbjct 76024 TCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCGGGCGG 76070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563860037899680