Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq176411 149 6e-31 seq74841 149 6e-31 seq4323 145 8e-30 seq9079 141 9e-29 seq48326 136 4e-27 seq2125 89.7 5e-13 >seq176411 Length=6678 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| ||| | || |||||| ||| | Sbjct 5025 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 4966 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| ||||| ||||| ||||| | |||||| Sbjct 4965 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 4906 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||| |||| |||| ||||| ||| ||| |||||| Sbjct 4905 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCGCCGATTACAAC 4846 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| |||| || || | || ||||| Sbjct 4845 ATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCG 4811 >seq74841 Length=4471 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| ||| | || |||||| ||| | Sbjct 2989 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 3048 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| ||||| ||||| ||||| | |||||| Sbjct 3049 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 3108 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||| |||| |||| ||||| ||| ||| |||||| Sbjct 3109 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 3168 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| |||| || || | || ||||| Sbjct 3169 ATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCG 3203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||||| | || | ||||| | |||||||| || ||||| | ||||| ||||| || | Sbjct 2831 AAACGGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTA 2890 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| ||||| ||||| || |||| ||||||||| ||||||||||| ||||||| Sbjct 2891 TTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGG 2950 Query 38434 A 38434 | Sbjct 2951 A 2951 >seq4323 Length=113087 Score = 145 bits (160), Expect = 8e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| ||| | || |||||| ||| | Sbjct 37122 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTCGAGCCCAGC 37063 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| ||||| ||||| ||||| | |||||| Sbjct 37062 GACACCATCAAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCAGACCAA 37003 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||| |||| |||| ||||| ||| ||| |||||| Sbjct 37002 CAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGCCGCACTCTCTCCGATTACAAC 36943 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 || || |||||| |||| || || Sbjct 36942 ATTCAGAAGGAATCGACCCTCCA 36920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||||| | || | ||||| | |||||||| || ||||| | ||||| ||||| || | Sbjct 37280 AAACGGTGAAGGCCAAAATTCAGGACAAAGAAGGCATTCCTCCGGACCAGCAGCGTCTTA 37221 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| ||||| ||||| || |||| ||||||||| ||||||||||| ||||||| Sbjct 37220 TTTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTCTCGGACTACAACATTCAAAAGG 37161 Query 38434 A 38434 | Sbjct 37160 A 37160 >seq9079 Length=83715 Score = 141 bits (156), Expect = 9e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||| ||||| ||| | || || ||| | | Sbjct 2651 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTAGAGGTTGAGCCTAG 2592 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | || | ||||||| ||||| ||||| ||||| | ||||| Sbjct 2591 CGACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCA 2532 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||| |||| |||| |||||| ||| ||||||||| Sbjct 2531 ACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAGGACGGGCGCACTCTCTCCGACTACAA 2472 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| |||| || || | || ||||| Sbjct 2471 TATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCG 2436 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || ||||||||||| |||| |||||| | | Sbjct 2878 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCTAGT 2819 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | |||||||| ||||| || || || || | || || Sbjct 2818 GACACCATTGAAAATGTCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCTGATCAG 2759 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | |||||||||||||| || |||| |||||||| ||||||||| Sbjct 2758 CAACGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGCACCCTGTCTGACTACAAC 2699 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 || |||||||| |||| || || Sbjct 2698 ATTCAAAAGGAGTCGACCCTTCA 2676 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||| ||||| | || || || ||| Sbjct 3106 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACGATCACGCTAGAAGTTGAACCCAGT 3047 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||| |||| ||||| ||||| || || | ||||| Sbjct 3046 GACACGATCGAGAACG-TCAAAGCAAAGATCCAAGACAAGGAGGGTATCCCACCTGACCA 2988 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 2987 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCTCAGACTACAA 2928 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || || || ||||||||||| | | |||||| Sbjct 2927 CATTCAGAAAGAGTCCACCCTACACTTGGTGCTGCGACTTCGCGGCGGC 2879 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| | || || || ||| | Sbjct 3334 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACGATCACGCTGGAAGTTGAACCCAGC 3275 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||| |||| ||||| ||||||||||| | ||||| Sbjct 3274 GACACGATCGAGAACG-TAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 3216 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||||||||| || |||| || || ||| |||||||| Sbjct 3215 GCAGCGTCTCATCTTTGCTGGCAAACAGCTCGAGGACGGCCGTACACTCTCAGACTACAA 3156 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || || | || || || | ||||| || Sbjct 3155 CATTCAGAAAGAGTCCACTCTTCACCTTGTGCTACG 3120 >seq48326 Length=57257 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||| ||||| ||| | || || ||| | | Sbjct 53553 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATAACCCTGGAGGTTGAGCCTAG 53612 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | || | ||||||| ||||| ||||| ||||| | ||||| Sbjct 53613 CGACACCATCGAAAATGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCACCGGACCA 53672 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || ||||| ||| |||| || | ||| || ||| ||||||||| Sbjct 53673 ACAGCGTCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGGCGTACTCTCTCCGACTACAA 53732 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || || |||||| |||| || || | || ||||| | | ||||||| Sbjct 53733 TATTCAGAAGGAATCGACCCTCCACCTTGTCCTGCGGCTTCGTGGCGGCC 53782 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| | || |||||| | | Sbjct 53326 ATGCAAATTTTCGTGAAGACTCTGACGGGCAAGACGATCACCCTGGAGGTCGAGCCGAGT 53385 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | ||||||| ||||| || || ||||| | || || Sbjct 53386 GACACGATTGAGAACG-TGAAGGCGAAAATCCAGGACAAGGAAGGGATTCCACCTGATCA 53444 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||||||||||| || |||| || ||||| |||||||| Sbjct 53445 GCAGCGTCTTATCTTTGCGGGCAAACAGCTAGAAGACGGCCGTACCCTGTCTGACTACAA 53504 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 ||| |||||||| |||| || || Sbjct 53505 CATTCAAAAGGAGTCGACCCTTCA 53528 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| || ||||| | || || || ||| | Sbjct 52870 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTGGAAGTTGAACCCAGC 52929 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||| |||| ||||| ||||||||||| | ||||| Sbjct 52930 GACACGATCGAGAACG-TAAAAGCAAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 52988 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||| || |||||||| Sbjct 52989 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACACTTTCGGACTACAA 53048 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || ||||||||||| | | |||||| Sbjct 53049 CATCCAGAAAGAGTCCACCCTCCACTTGGTGCTGCGACTTCGTGGCGGC 53097 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || ||||||||||| |||| |||||| ||| Sbjct 53098 ATGCAGATTTTTGTCAAGACACTCACCGGTAAAACCATCACGCTCGAAGTCGAGCCCAGT 53157 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| || || ||||| | || || Sbjct 53158 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 53217 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || |||| ||||| || ||||||||| Sbjct 53218 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACACTATCTGACTACAAC 53277 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || ||| | || ||||| Sbjct 53278 ATTCAGAAGGAGTCCACCCTTCATCTCGTCCTGCG 53312 >seq2125 Length=82343 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | || ||||| |||||||| || | |||||||| Sbjct 76072 TCCCGCCCGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCC 76013 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||||||||| || || |||| ||||| |||||||||| Sbjct 76012 TGTCGGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCG 75964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498953103618560