Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq82194 161 4e-34 seq118618 113 2e-19 seq9079 104 9e-17 seq48326 91.5 6e-13 seq45273 89.7 2e-12 seq114166 86.0 2e-11 seq59496 86.0 2e-11 >seq82194 Length=16608 Score = 161 bits (178), Expect = 4e-34 Identities = 248/351 (71%), Gaps = 21/351 (6%) Strand=Plus/Plus Query 451267 TCTTACT-AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 ||||| | ||||||||| |||| | |||| | ||| | || ||| | || ||||||| Sbjct 9999 TCTTAATGAAAATGAAAAAAACGGTAGAAGATTATTTAGGCCATCCCTTAACGGATGCAG 10058 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 |||| || || || ||||| || |||||| | ||||| ||||| |||||||||||||| Sbjct 10059 TAATCACAGTACCAGCTTACTTTAATGATTCCCAACGTCAAGCGACTAAAGATGCAGGTA 10118 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 | ||||| ||| | |||||| || ||||||||||||||||| || |||||| | || | Sbjct 10119 AAATTGCGGGTCTTAATGTTAAACGTATTATTAATGAACCTACCGCTGCTGCTTTGGCCT 10178 Query 451446 ATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 ||||| | ||| || |||| || || || ||| || | ||| || || | Sbjct 10179 ATGGAAT-GGATAAGAAAAA-----AGGTGATCGTAAGATTGCTGTTTATGACTTAGGCG 10232 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGG------------TATTTG 451553 | ||||| ||||| ||| | || ||||| |||| || ||||| Sbjct 10233 GTGGAACGTTTGATATTTCAATTATTGAAATTGCTGATGTGGATGGTGAACACCAATTTG 10292 Query 451554 AAGTAAAGGCAACCAATGGTGATACTCATC-TAGGAGGTGAAGATATTGAT 451603 |||| ||| || ||||||||||| | || ||||||||||||| ||||| Sbjct 10293 AAGTCCTGGCCACGAATGGTGATAC-CTTCTTAGGAGGTGAAGACTTTGAT 10342 >seq118618 Length=1519 Score = 113 bits (124), Expect = 2e-19 Identities = 198/283 (70%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 451232 aaaaCTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 |||| ||||||||| |||||||| || | |||||| | | |||||||| ||||| || Sbjct 1228 AAAATTTTTGCTCCCGAAGAAATCTCTGCCATGGTTTGTCC-AAAATGAAGGAAACTGCG 1286 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 || || |||| ||| ||| |||| || | || ||||| || |||||||| Sbjct 1287 GAGGCTTACCTTGGAAAGAAAGTAACTCATGCTGTCGTGACAGTTCCAGCCTATTTCAAC 1346 Query 451352 G-ATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCG 451410 | |||| ||||| || || || || ||||| ||| || || ||| | ||||| | | Sbjct 1347 GGATGCCCAACGCCAGGCCACCAAGGATGCTGGAACCATCGCAGGTCTCAATGTGATGAG 1406 Query 451411 AATTATTAATGAACCTACAGCAGCTGC-TCTAGCATATGGACTAGGAAAATCAAAAGAAA 451469 ||||| ||||||||||| || ||||| | |||||||| || | ||| ||| || Sbjct 1407 GATTATCAATGAACCTACTGCTGCTGCGAATTGCATATGGTCTTGACAAA--AAAGGA-- 1462 Query 451470 CAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAAC 451512 | ||| || || || || || || || || ||||| || || Sbjct 1463 -GGGAGAGAAGAACATCTTGGTCTTCGACTTGGGTGGTGGCAC 1504 >seq9079 Length=83715 Score = 104 bits (114), Expect = 9e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || || ||||| || || |||||||| || || || ||||| | Sbjct 3565 ATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCG 3506 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||| | ||||||| | | || |||||||| || |||||||||||||||||||| Sbjct 3505 AGTGACACCATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGAC 3446 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || || ||| | || ||| | || || || ||||| || || | || || | ||||| Sbjct 3445 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACGCTGTCTGATTAC 3386 Query 391227 AATATTGATAAGGATGCAACACTTCAC 391253 || ||| | || || || |||||| Sbjct 3385 AACATTCAGAAAGAAAGTACCCTTCAC 3359 >seq48326 Length=57257 Score = 91.5 bits (100), Expect = 6e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | ||||| || || ||||| || || |||||||| || || || ||||| | Sbjct 52642 ATCATGCAGATTTTTGTGAAGACACTCACGGGAAAAACTATCACGCTCGAAGTTGAGCCT 52701 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||| | |||||| | | || |||||||| || |||||||||||||||||||| Sbjct 52702 AGTGACACTATTGAAAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATTCCTCCTGAC 52761 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGA 391204 || || ||| | || ||| | || || || ||||| || Sbjct 52762 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGA 52799 >seq45273 Length=11515 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || || || || |||||||| ||||| ||| | || |||| || || |||||| Sbjct 3119 GACGCTGTKATCACGGTGCCCGCTTACTTCAACGATTCTCAGAGGCAGGCGACGAAAGAT 3178 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || ||| |||||| | || || || || || || ||||||||||| ||||| || Sbjct 3179 GCCGGCGCTATCGCTGGTCTCAACGTGCTGCGCATCATCAATGAACCTACTGCAGCCGCG 3238 Query 451439 CTAGCATATGGACT 451452 || || ||||| || Sbjct 3239 CTTGCCTATGGCCT 3252 >seq114166 Length=9610 Score = 86.0 bits (94), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 |||||||| ||||| ||||| || | || || || | || | ||| | ||| Sbjct 1280 ATGGTTCTCACTAAGATGAAGGAGAYCGCYGAGGCGTACTTGGGAAARCAAGTGAGCGAT 1221 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 1220 GCTGTCATCACGGTGCCCGCTTACTTCAACGACTCTCAGAGGCAAGCCACCAAAGACGCC 1161 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | || || || || || || || || || || ||||||||||| Sbjct 1160 GGTGCCATTGCGGGTCTCAACGTGCTGCGCATCATCAACGAGCCGACCGCAGCTGCTCTC 1101 Query 451442 GCATATGGACT 451452 || || ||||| Sbjct 1100 GCCTACGGACT 1090 >seq59496 Length=32294 Score = 86.0 bits (94), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 451262 ATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGAT 451321 |||||||| ||||| ||||| || | || || || | || | ||| | ||| Sbjct 7062 ATGGTTCTCACTAAGATGAAGGAGAYCGCYGAGGCGTACTTGGGAAARCAAGTGAGCGAT 7121 Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || || |||||||| ||||| || | || ||||||| || ||||| || Sbjct 7122 GCTGTCATCACGGTGCCCGCTTACTTCAACGACTCTCAGAGGCAAGCCACCAAAGACGCC 7181 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| ||| | || || || || || || || || || || ||||||||||| Sbjct 7182 GGTGCCATTGCGGGTCTCAACGTGCTGCGCATCATCAACGAGCCGACCGCAGCTGCTCTC 7241 Query 451442 GCATATGGACT 451452 || || ||||| Sbjct 7242 GCCTACGGACT 7252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1970780064693072