Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq121920 104 3e-17 seq139282 100 4e-16 >seq121920 Length=6067 Score = 104 bits (114), Expect = 3e-17 Identities = 253/373 (68%), Gaps = 14/373 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || |||||||| || || || | |||| ||| || | || ||| || || ||| Sbjct 4507 CGGTCGAAGCGACCCGGCCGCAGCAACGCGGGATCGAGCACGTCGGGGCGGTTGGTGGCG 4566 Query 15945 GCGATGACAACAATACC-TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 ||||||| | || || | |||| || || || |||||||| | ||||||||| Sbjct 4567 GCGATGATGATGATGCCCTCATTCGCC-TCGAACCCGTCCATCTCGACGAGAAGCTGGTT 4625 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGC-TGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 | || || || || || ||||| | | || | ||||| | || || || | Sbjct 4626 CAGCGTCTGCTCGCGCTCGTCATTACCGTTGCCGAGG-CCAGCGCCACGATGACGGCCGA 4684 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATT--TTCGCGAGCGACTTCA 16118 | || || || || || |||||||||||||| | | |||| ||||| | ||| Sbjct 4685 CCGCGTCGATTTCGTCGATGAAGACGATGCAGGGCGCGGATTTCTTCGCCTG----TTCG 4740 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || | || || || || | ||||| ||||| || |||||||| ||||||| | | || Sbjct 4741 AACATGTCGCGCACGCGGCTCGCGCCGACACCGACGAACATCTCGACAAAGTCCGAGCCG 4800 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || | || ||| || ||| || || ||||| ||||| |||||||| | |||||| Sbjct 4801 GAA-ATGGTGAAGAACGGCACACCAGCCTCGCCCGCGATGGCGCGGGCGAGCAAAGTCTT 4859 Query 16238 ACCCGTACCTGGC 16250 || || || ||| Sbjct 4860 GCCGGTGCCGGGC 4872 >seq139282 Length=14605 Score = 100 bits (110), Expect = 4e-16 Identities = 248/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| || | | ||| |||||| | |||| ||||| || ||| Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || ||||||| |||||| || | |||||||||||||| || || || || ||| Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCTTCAAAACCATCCATTTCCACTAAGAGTTGATTA 10599 Query 16005 ATAGTTTGTTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 16063 | ||||| || |||||||| | | | || |||||||| || || || || Sbjct 10598 AGGGTTTGCTCTCGTTCATCGTGACCACCACCTA-AACCAGCACCACGGTGACGCCCTAC 10540 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTTCAAA 16120 |||||| || |||||||| || | || || || ||| || | ||| ||||| Sbjct 10539 GGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCT---TAGCTTGATCAAA 10483 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || || || ||| || |||||||||||||| || ||||| | | | || Sbjct 10482 CATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACCCGA 10423 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | || | | ||| || || || | |||||| || | ||| || ||||| || |||| Sbjct 10422 A-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTTTAC 10364 Query 16240 CCGTACCTGG 16249 | || || || Sbjct 10363 CGGTTCCCGG 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619228688620480