Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq121920 114 2e-20 seq70405 82.4 9e-11 >seq121920 Length=6067 Score = 114 bits (126), Expect = 2e-20 Identities = 256/373 (69%), Gaps = 16/373 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| ||||| || || || | || ||| || | ||| ||||| || ||| Sbjct 4507 CGGTCGAAGCGACCCGGCCGCAGCAACGCGGGATCGAGCACGTCGGGGCGGTTGGTGGCG 4566 Query 11563 GCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || |||| | ||||| |||||| ||||| |||||||| || |||||||||| Sbjct 4567 GCGATGATGATGATGCC---CTCATTCGCCTCGAACCCGTCCATCTCGACGAGAAGCTGG 4623 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATA--CCACCTGCCGAACGCTTCTTA 11676 || | |||||| || ||||| || || | || | ||| | ||| ||| | Sbjct 4624 TTCAGCGTCTGCTCGCGCTCGTCATTACCGTTGCCGAGGCCAGC-GCC--ACGATGACGG 4680 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTT-GGTTGGCACGTGCCTGTTC 11735 ||||| ||||| || || |||||||| ||||| || || || | | |||||||| Sbjct 4681 CCGACCGCGTCGATTTCGTCGATGAAGACGATGCAGGGCGCGGATTTCTTC-GCCTGTTC 4739 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| | || || || || |||| || ||||| ||||||||||| || |||| | | | Sbjct 4740 GAACATGTCGCGCACGCGGCTCGCGCCGACACCGACGAACATCTCGACAAAGTCCGAGCC 4799 Query 11796 AG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | || |||| ||| || ||| || ||| || |||||||| || ||||| | ||||| Sbjct 4800 GGAAATGGTGAA-GAACGGCACACCAGCCTCGCCCGCGATGGCGCGGGCGAGCAAAGTCT 4858 Query 11855 TACCCGTACCAGG 11867 | || || || || Sbjct 4859 TGCCGGTGCCGGG 4871 >seq70405 Length=8866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 ||||| |||| | || || |||| |||| | ||| ||| || | ||| |||||| Sbjct 3219 GTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGA 3160 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || || ||| ||||| |||||||| || ||||||||||| || || ||||| |||| Sbjct 3159 TTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTCAATCTGA 3100 Query 110449 GACTTGAGAATGGCC 110463 |||| || |||||| Sbjct 3099 GACTCAAGGATGGCC 3085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587539752575200