Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq139282 111 2e-19 >seq139282 Length=14605 Score = 111 bits (122), Expect = 2e-19 Identities = 254/372 (68%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| || | | ||| |||||| | |||| ||||| || ||| Sbjct 10718 CGGTCAAAACGTCCTGGCCGTAATAAAGCGGGATCAAGTACATCAGGTCGATTAGTGGCG 10659 Query 9252 GCGATGACAACAATACC-TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || ||||||| |||||| | ||| | |||||||||||||| || || ||||| || Sbjct 10658 GCCATGACAATAATACCCTCTTTGCCT-TCAAAACCATCCATTTCCACTAAGAGTTGATT 10600 Query 9311 AATAGTTTGTTCCCGTTCATCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 || ||||| || |||||||| | | | || |||||||| || || || | Sbjct 10599 AAGGGTTTGCTCTCGTTCATCGTGACCACCACCTA-AACCAGCACCACGGTGACGCCCTA 10541 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGG---TTGATT-TTCGCGGGCGATTTCA 9425 ||||||| || |||||||| || | |||||| || ||| || || || | ||| Sbjct 10540 CGGCATCGATTTCATCAATAAAAATAATACAAGGCGCTTGCTTCTTAGCTTG----ATCA 10485 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | || ||||| | ||| || |||||||||||||| || ||||| | | | Sbjct 10484 AACATGTCACGAACGCGGGAGGCACCTACACCAACAAACATTTCAACAAAATCGGAACCC 10425 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 ||| || | | ||| || || || | |||||| || | ||| || ||||| || || Sbjct 10424 GAA-ATAGTAAAGAACGGTACTTTGGCTTCACCAGCTACCGCTTTAGCTAGAAGGGTTTT 10366 Query 9545 ACCCGTACCTGG 9556 ||| || || || Sbjct 10365 ACCGGTTCCCGG 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588542102320160