Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq121744 98.7 1e-15 seq121330 82.4 9e-11 >seq121744 Length=24591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||||||||||| ||||| ||||||||||||| ||| | |||||| | Sbjct 10985 GGAAGGGTGGCCGAGTGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGCCTGCAAGGGCA 10926 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 |||||||||| ||||||||| |||||| Sbjct 10925 CCGTGGGTTCGAATCCCACCCCTTCCG 10899 >seq121330 Length=14484 Score = 82.4 bits (90), Expect = 9e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Minus Query 141337 TTAGCTCAGA-GGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCGATCCCGTCA 141395 ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 9321 TTAGCTCAGTTGGTAGAGCATCTCGTTTACACCGAGAGGGTCGGCGGTTCGAGCCCGTCA 9262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608908316883360