Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq124128 87.8 2e-12 seq8472 87.8 2e-12 seq117310 84.2 3e-11 seq6590 82.4 9e-11 >seq124128 Length=5331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 |||||| | || | || || ||| ||||||||||||| || |||| | | | | Sbjct 4096 ATTATGTTAACTAATCCTTCAACATTAGGTGTATTTGAAAGAAAAATTATAGAAGTTTCG 4155 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 || || ||||||| |||||| | | ||| |||||| || ||| ||||||| Sbjct 4156 AAAATTATTCATGATGTTGGTGGATTGCTTTATTATGATGGGGCTAATTTAAATGCGATT 4215 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCA-GATGT-ATGTCATCTAAACTTACATA 155049 ||||| | |||| |||| ||||| ||||| ||| ||| |||| ||||||| Sbjct 4216 TTAGGAAAATATCGACCAGGTGA-TATGGGATTTGATGTTATG-CATTTAAATTTACATA 4273 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100 |||| || | | ||||||||| || ||||||||||| | |||||| ||| Sbjct 4274 AAACCTTTGGGACTCCACATGGTGGAGGAGGTCCTGGTGCGGGTCCTGTAG 4324 >seq8472 Length=21241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 |||||| | || | || || ||| ||||||||||||| || |||| | | | | Sbjct 198 ATTATGTTAACTAATCCTTCAACATTAGGTGTATTTGAAAGAAAAATTATAGAAGTTTCG 257 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 || || ||||||| |||||| | | ||| |||||| || ||| ||||||| Sbjct 258 AAAATTATTCATGATGTTGGTGGATTGCTTTATTATGATGGGGCTAATTTAAATGCGATT 317 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCA-GATGT-ATGTCATCTAAACTTACATA 155049 ||||| | |||| |||| ||||| ||||| ||| ||| |||| ||||||| Sbjct 318 TTAGGAAAATATCGACCAGGTGA-TATGGGATTTGATGTTATG-CATTTAAATTTACATA 375 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100 |||| || | | ||||||||| || ||||||||||| | |||||| ||| Sbjct 376 AAACCTTTGGGACTCCACATGGTGGAGGAGGTCCTGGTGCGGGTCCTGTAG 426 >seq117310 Length=1643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/231 (70%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 |||||| | || | || || ||| ||||||||||||| || |||| | | | | Sbjct 1007 ATTATGTTAACTAATCCTTCAACATTAGGTGTATTTGAAAGAAA-ATTATAGAAGTTTCG 949 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 || || ||||||| |||||| | | ||| |||||| || ||| ||||||| Sbjct 948 AAAATTATTCATGATGTTGGTGGATTGCTTTATTATGATGGGGCTAATTTAAATGCGATT 889 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCA-GATGT-ATGTCATCTAAACTTACATA 155049 ||||| | |||| |||| ||||| ||||| ||| ||| |||| ||||||| Sbjct 888 TTAGGAAAATATCGACCAGGTGA-TATGGGATTTGATGTTATG-CATTTAAATTTACATA 831 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100 |||| || | | ||||||||| || ||||||||||| | |||||| ||| Sbjct 830 AAACCTTTGGGACTCCACATGGTGGAGGAGGTCCTGGTGCGGGTCCTGTAG 780 >seq6590 Length=109512 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 || ||| || | || || |||||| | |||||||| ||| | ||||||| || || || Sbjct 19569 GCTTACCGACTGGCCCTGCAGACTCGTGAGCAGCACATCCGCCGAGACAAGGCGACGAGC 19510 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTC 153991 ||||||||||| || ||||| |||||||| || ||||| Sbjct 19509 AACATCTGCACGGCGCAGGCGCTGCTGGCCAACATGTC 19472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577800360626560