Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq124128 84.2 3e-11 seq8472 84.2 3e-11 >seq124128 Length=5331 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 |||||| | || |||| || ||| ||||||||||||| ||| || | | | | | Sbjct 4096 ATTATGTTAACTAATCCTTCAACATTAGGTGTATTTGAAAGAAAAATTATAGAAGTTTCG 4155 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 || ||| ||||||| |||||| | | ||| |||||| || ||| ||||||| Sbjct 4156 AAAATTATTCATGATGTTGGTGGATTGCTTTATTATGATGGGGCTAATTTAAATGCGATT 4215 Query 159667 GTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATG-TATGTCATCTAAACTTACATA 159724 |||| | |||| |||| ||| || |||| |||| ||| |||| ||||||| Sbjct 4216 TTAGGAAAATATCGACCAGGTGA-TATGGGATTTGATGTTATG-CATTTAAATTTACATA 4273 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCT 159771 | || || | | ||||||||| || ||||||||||| | |||||| Sbjct 4274 AAACCTTTGGGACTCCACATGGTGGAGGAGGTCCTGGTGCGGGTCCT 4320 >seq8472 Length=21241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 |||||| | || |||| || ||| ||||||||||||| ||| || | | | | | Sbjct 198 ATTATGTTAACTAATCCTTCAACATTAGGTGTATTTGAAAGAAAAATTATAGAAGTTTCG 257 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 || ||| ||||||| |||||| | | ||| |||||| || ||| ||||||| Sbjct 258 AAAATTATTCATGATGTTGGTGGATTGCTTTATTATGATGGGGCTAATTTAAATGCGATT 317 Query 159667 GTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATG-TATGTCATCTAAACTTACATA 159724 |||| | |||| |||| ||| || |||| |||| ||| |||| ||||||| Sbjct 318 TTAGGAAAATATCGACCAGGTGA-TATGGGATTTGATGTTATG-CATTTAAATTTACATA 375 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCT 159771 | || || | | ||||||||| || ||||||||||| | |||||| Sbjct 376 AAACCTTTGGGACTCCACATGGTGGAGGAGGTCCTGGTGCGGGTCCT 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586617207746240