Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9079 147 5e-30 seq48326 145 2e-29 seq176411 129 1e-24 seq74841 127 5e-24 seq4323 127 5e-24 >seq9079 Length=83715 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||||||||||| ||||| ||||| || | || || | || || ||| Sbjct 3126 ACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCG 3185 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || || || |||||||| ||||| || || |||||||| Sbjct 3186 AGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGG 3245 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || |||||||| || ||||| ||| ||||| || || | |||||| Sbjct 3246 ATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTG 3305 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || || | ||||| Sbjct 3306 CCAGTCAAAGTCTTGACAAAGATCTGCAT 3334 Score = 134 bits (148), Expect = 3e-26 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || ||||||||||| ||||| ||||| || | || || | Sbjct 2889 AGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGG 2948 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || || ||||| || || || ||||| || || || || || Sbjct 2949 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCC 3008 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGG 195099 |||||||| || ||| ||||||||||| || ||||| ||| ||| ||||| || Sbjct 3009 TTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTC---ACTGGGTTCAACTTCTAGC 3065 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || || |||||||| || ||||| | ||||| Sbjct 3066 GTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||||||||| |||| ||||| | ||| || || Sbjct 2442 ACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCC 2501 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || || |||||||| || |||||||| || ||||| || Sbjct 2502 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 2561 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || |||||||| | || || || ||||| | ||||| Sbjct 2562 ATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTG 2621 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | |||||| Sbjct 2622 CCGGTGAGGGTCTTCACGAAGATCTGCATT 2651 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| ||||| |||||||| | || || | || || || Sbjct 3354 ACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCA 3413 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 3414 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGA 3473 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| |||||| || ||||||||||| ||| || ||||| || || | || Sbjct 3474 ATTTTCGCCTTGACATTTTCAATGGTGTC---ACTCGGCTCAACTTCGAGCGTGATAGTT 3530 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | || || || || | ||||| Sbjct 3531 TTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| |||||||| ||||| || | || || | || ||||| Sbjct 2670 ACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGGCCGTCTTCT 2729 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || |||||||| ||||| || || || || || ||||| ||||| || Sbjct 2730 AGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGG 2789 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 |||||| |||||| || ||||||||||| Sbjct 2790 ATTTTTGCCTTGACATTTTCAATGGTGTC 2818 >seq48326 Length=57257 Score = 145 bits (160), Expect = 2e-29 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| |||||||| ||||| || | || || | || ||||| Sbjct 53534 ACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGACAGGGTACGGCCGTCTTCT 53475 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || |||||||| || || || || || ||||| ||||| ||||| || Sbjct 53474 AGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGG 53415 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||||||||| ||||| ||| || || || ||||| | |||| Sbjct 53414 ATTTTCGCCTTCACGTTCTCAATCGTGTC---ACTCGGCTCGACCTCCAGGGTGATCGTC 53358 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||| || ||||| | |||||| Sbjct 53357 TTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||||||||| |||| ||||| | ||||||||| Sbjct 53762 ACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCC 53703 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || || |||||||| || |||||||| || ||||| || Sbjct 53702 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 53643 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || |||||||| | || || || ||||| | ||||| Sbjct 53642 ATTTTAGCCTTCACATTTTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTG 53583 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || || ||||| | |||||| Sbjct 53582 CCGGTGAGGGTCTTCACGAAGATCTGCATT 53553 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || | ||| || ||||||||||| || || ||||| || | ||| || | Sbjct 53087 AGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGG 53028 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || ||||||||||| || || ||||| || || || |||||||| ||||| || || Sbjct 53027 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCC 52968 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || ||| || |||||||| || ||||| ||| ||||| || || Sbjct 52967 TTGTCTTGGATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTG 52908 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||||||| || || || | ||||| Sbjct 52907 ATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| |||||||| || ||||| ||||| || | || || | || |||||| Sbjct 53306 ACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCG 53247 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || |||||||||||||| ||||| || Sbjct 53246 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 53187 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||| |||||| || ||||||||||| Sbjct 53186 ATCTTTGCCTTGACATTTTCAATGGTGTC 53158 Score = 114 bits (126), Expect = 3e-20 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| ||||| |||||||| | || | | | || || Sbjct 52850 ACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCG---TACGGTCCTCA 52794 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 52793 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGA 52734 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || ||||| ||||| | || ||||| || || | || ||| Sbjct 52733 ATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTT 52674 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 52673 CCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 >seq176411 Length=6678 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||| ||||||||||| ||||| | || || || Sbjct 4817 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCC 4876 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 4877 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 4936 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || | |||||||| || || || ||||| | ||||| Sbjct 4937 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 4996 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 4997 CCGGTGAGGGTCTTAACGAAGATTTGCAT 5025 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 5/127 (4%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| || ||||| |||||||| ||||| || | || || | || ||||||||| Sbjct 5051 AGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGC 5110 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGG----TCTGGAGGAAT-GCCTTCTTTGTCTT 195049 ||||| || ||||| ||||| || || ||| | |||||||| |||| |||||||| Sbjct 5111 TGCTTGCCGGCGAAAATAAGACGCTGCTGGGGTCCCCGGAGGAATGGCCTGCTTTGTCTG 5170 Query 195050 GAATTTT 195056 |||||| Sbjct 5171 AAATTTT 5177 >seq74841 Length=4471 Score = 127 bits (140), Expect = 5e-24 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| || | || || | || |||||| Sbjct 2969 ACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCG 2910 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| ||||| || || ||||| |||||||||||||||||||| ||| Sbjct 2909 AGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGA 2850 Query 195052 ATTTT 195056 ||||| Sbjct 2849 ATTTT 2845 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||| |||||||||| ||||| | || || || Sbjct 3197 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCC 3138 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 3137 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 3078 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || | |||||||| || || || ||||| | ||||| Sbjct 3077 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 3018 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 3017 CCGGTGAGGGTCTTAACGAAGATTTGCAT 2989 >seq4323 Length=113087 Score = 127 bits (140), Expect = 5e-24 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| |||||||| ||||| || | || || | || |||||| Sbjct 37142 ACGAGGTGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCG 37201 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| ||||| || || ||||| |||||||||||||||||||| ||| Sbjct 37202 AGCTGCTTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGA 37261 Query 195052 ATTTT 195056 ||||| Sbjct 37262 ATTTT 37266 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || ||||| |||||||||| ||||| | || || || Sbjct 36914 ACAAGGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCC 36973 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 36974 AACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGG 37033 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || | |||||||| || || || ||||| | ||||| Sbjct 37034 ATTTTAGCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTG 37093 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 37094 CCGGTGAGGGTCTTAACGAAGATTTGCAT 37122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106708435485428