Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9079 125 5e-24 seq48326 123 2e-23 >seq9079 Length=83715 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| || ||||||||||||||||| || || || || | || | || || ||||| Sbjct 3359 GTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGCCGTCCTCAAGCTG 3418 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || |||||||| | || | || |||||||| ||| || Sbjct 3419 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTT 3478 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| | | || | |||| | |||||| |||| || || ||||||||||| Sbjct 3479 CGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTGATAGTTTTTCCCGT 3538 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||||||||| |||||||| Sbjct 3539 GAGTGTCTTCACAAAAATCTGCAT 3562 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||||||||| ||||| || || | || | || || Sbjct 2898 ACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTGCGGCCGTCCTCG 2957 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | ||||||||||| Sbjct 2958 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGG 3017 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | |||| |||| || ||||| || | || || ||||| Sbjct 3018 ATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATCGTTTTG 3077 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| || ||||||||||| Sbjct 3078 CCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| |||||||||||||| ||||| || || | || | || || ||||| Sbjct 3131 GTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCTGAGAGTGTACGGCCGTCCTCGAGCTG 3190 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || ||||| || || || ||||||||| | || | ||||||||||| ||||| Sbjct 3191 TTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTT 3250 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 ||| ||| | |||| || | || ||||| || | || || || || || || Sbjct 3251 TGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATCGTCTTGCCAGT 3310 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | |||||| |||||||||||||| Sbjct 3311 CAAAGTCTTGACAAAGATCTGCAT 3334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || ||||| || || | || | || |||| ||| || || ||||| Sbjct 2459 TTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAA 2518 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | ||||||||||| || || || || Sbjct 2519 GATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATT 2578 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | | |||||| || | ||||||||| || || ||||| |||||||| Sbjct 2579 TTCGATGGTGTCGCTAGGCTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGGGTCTTCAC 2638 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 2639 GAAGATCTGCAT 2650 >seq48326 Length=57257 Score = 123 bits (136), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| || ||||||||||||||||| || || || || | || || ||| ||||| Sbjct 52845 GTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGGTCCTCA---AGCTG 52789 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || |||||||| | || | || |||||||| ||| || Sbjct 52788 CTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAATTTT 52729 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||||| | | || | |||| | |||||| |||| || || ||||||||||| Sbjct 52728 CGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTGATAGTTTTTCCCGT 52669 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||||||||| |||||||| Sbjct 52668 GAGTGTCTTCACAAAAATCTGCAT 52645 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| ||||||||||| | || | || || Sbjct 53078 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGTGTGCGGCCGTCCTCG 53019 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||||||| | || | ||||||||||| Sbjct 53018 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGG 52959 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | |||| || | || ||||| || | || || || || Sbjct 52958 ATCTTTGCTTTTACGTTCTCGATCGTGTCGCTGGGTTCAACTTCCAGCGTGATTGTCTTG 52899 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| |||||||||||||| Sbjct 52898 CCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || | || || ||||| |||||||| || Sbjct 53288 TCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAG 53229 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| ||||| | Sbjct 53228 ATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTT 53169 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || |||| || |||||||| || ||||| ||||| ||| Sbjct 53168 TCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGTGAGTGTCTTGACA 53109 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 53108 AAAATCTGCAT 53098 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || ||||| || || | || |||| |||| ||| || || ||||| Sbjct 53745 TTCCTTCTGAATATTGTAGTCGGAGAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAA 53686 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || ||||| | || | ||||||||||| || || || || Sbjct 53685 GATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATTTTAGCCTTCACATT 53626 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | | |||||| || | ||||||||| || || ||||| |||||||| Sbjct 53625 TTCGATGGTGTCGCTAGGCTCAACCTCCAGGGTTATGGTCTTGCCGGTGAGGGTCTTCAC 53566 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 53565 GAAGATCTGCAT 53554 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | || || | || | ||||| || || || |||||||| ||||| | Sbjct 53554 TTCCTCCGCGCAGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAG 53495 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || | || || |||||||| || ||||| || || || ||||| || | | Sbjct 53494 ACAGGGTACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTG 53435 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||| |||||||| || ||| || ||| | |||| |||| | ||| | Sbjct 53434 GAATCCCTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGA 53375 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || || || ||||| ||||||||||| || || ||||| Sbjct 53374 CCTCCAGGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323861755616352