Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq82194 158 1e-32 seq9079 118 9e-21 seq48326 116 3e-20 seq118618 107 2e-17 seq124123 96.9 3e-14 seq40083 96.9 3e-14 seq45273 86.0 5e-11 seq40474 86.0 5e-11 >seq82194 Length=16608 Score = 158 bits (174), Expect = 1e-32 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 550327 ACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA 550386 ||||||||| || || ||||||||||||||| |||| | | || | | || || Sbjct 9982 ACAAATTTCCGCTCAAGTCTTAATGAAAATGAAAAAAACGGTAGAAGATTATTTAGGCCA 10041 Query 550387 AGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGC 550446 | |||||||||||||| || |||||||| || |||||||| || ||||||||||| Sbjct 10042 TCCCTTAACGGATGCAGTAATCACAGTACCAGCTTACTTTAATGATTCCCAACGTCAAGC 10101 Query 550447 TACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTAC 550506 ||||||||||| || ||||| || ||||||||| |||||||| ||||||||||| Sbjct 10102 GACTAAAGATGCAGGTAAAATTGCGGGTCTTAATGTTAAACGTATTATTAATGAACCTAC 10161 Query 550507 TGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| | || |||||| | ||||| Sbjct 10162 CGCTGCTGCTTTGGCCTATGGAATGGATAA 10191 Score = 127 bits (140), Expect = 2e-23 Identities = 256/378 (68%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 |||||||| || || ||||| || |||||| || ||||||| ||| | | || || Sbjct 10736 GTTAATCCGGACGAAGCTGTGGCTATTGGTGCGGCTATTCAAGGTGCTGTATTGTCCGGC 10795 Query 552267 CAAACTGATGAAAAACTACAAAATATTGT-ACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 || | |||| | | |||| ||||| |||| || || || ||||| || Sbjct 10796 GAA------GTAAAAG----ATGTTTTGTTACTTG---ATGTCACGCCACTCTCTCTAGG 10842 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | ||||| | || || ||||||| || | || |||| |||||| || || || Sbjct 10843 AATTGAAACTTTAGGGGGCGTTATGACCAAATTAATTGATAAAAATACCACAATCCCAAC 10902 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 || || ||||||| ||| | | |||||||||||||||||||| |||| | Sbjct 10903 GAAGGCTAATCAAATATTTTCAACGGCTGAAAATAATCAAACTGCTGTTACAGTTCATGT 10962 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 ||| ||||||| | | | || || ||||| ||||| |||| | ||| Sbjct 10963 TTTACAAGGAGAGCGCGAGATGGCTTCAGCGAATAAATCGCTTGGACGTTTTGACTTAAC 11022 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || |||||| || || || ||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 11023 AGATATTCCACCAGCACCGCGTGGTGTACCACAAATTGAAGTTACTTTTGATATTGATGC 11082 Query 552566 CAATGGAATTTTGAATGT 552583 || || ||| | |||| Sbjct 11083 TAACGGTATTCTTCATGT 11100 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 ||||| || || | |||||| || ||||| ||||| || ||||||| || ||||| Sbjct 10182 CCATAGGCCAAAGCAGCAGCGGTAGGTTCATTAATAATACGTTTAACATTAAGACCCGCA 10123 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 ||||| ||||||| ||| ||||||||||| | ||||||||| || || || || || Sbjct 10122 ATTTTACCTGCATCTTTAGTCGCTTGACGTTGGGAATCATTAAAGTAAGCTGGTACTGTG 10063 Query 361826 ATCACTGC 361833 || ||||| Sbjct 10062 ATTACTGC 10055 >seq9079 Length=83715 Score = 118 bits (130), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || ||||| ||||||||||||||||| ||| |||||||||| || || | Sbjct 3345 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGG 3404 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || ||||| || || ||||| || || || | ||||| ||||||||||||||||| Sbjct 3405 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 3464 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || |||||||| || || ||||| || ||| | | | |||||| || Sbjct 3465 TTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTG 3524 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || || || || || || ||||| ||||| Sbjct 3525 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| ||||| |||||||| ||| |||| ||| ||||| |||| || || | Sbjct 2661 AGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTG--AATGTTGTAGTCAGACAGGGTGC 2718 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||| || ||||| || ||||| ||||| | |||||||||||| || || |||| Sbjct 2719 GGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCCCTT 2778 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | || || || |||||| || || ||||| || ||| | | |||||| | Sbjct 2779 CCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGACTTCGAGCG 2838 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | |||||||| || || || || || ||||| ||||| Sbjct 2839 TGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 2878 >seq48326 Length=57257 Score = 116 bits (128), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || || ||||| ||||||||||||||||| ||| |||||||||| || || | Sbjct 52859 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGG 52800 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || ||||| || || ||||| || || || | ||||| ||||||||||||||||| Sbjct 52799 ---TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 52743 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || |||||||| || || ||||| || ||| | | | |||||| || Sbjct 52742 TTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTG 52683 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || || || || || || ||||| ||||| Sbjct 52682 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Score = 95.1 bits (104), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| ||||| |||||||| ||| |||| ||| ||||| |||| || || | Sbjct 53543 AGCCGGAGGACAAGGTGAAGGGTCGACTCCTTTTG--AATGTTGTAGTCAGACAGGGTAC 53486 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||||| || ||||| || ||||| ||||| | ||||||||||| ||||| |||| Sbjct 53485 GGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCCCTT 53426 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | || || || ||||| || || |||||| || ||| | | || || | Sbjct 53425 CCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCAGGG 53366 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || ||||| || |||||||||||||| Sbjct 53365 TGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTGCAT 53326 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| || || || ||||||||||| || || ||| ||||| |||| ||| || | Sbjct 53316 GAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCG 53257 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || |||||||| || || || | |||||||| |||||||| ||||| Sbjct 53256 GCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTC 53197 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 || || || || ||| || || ||||| || ||| || | |||||| || Sbjct 53196 CTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGT 53137 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| || || || || || ||||| ||||| Sbjct 53136 GATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 >seq118618 Length=1519 Score = 107 bits (118), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 550310 AAACAATTTT--CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAG 550367 ||| |||||| | || ||| |||| || | ||||||| |||||||| |||| | Sbjct 1226 AAAAAATTTTTGCTCCCGAAGAAATCTCTGCCATGGTTTGTCC-AAAATGAAGGAAACTG 1284 Query 550368 CCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427 | |||| |||| | |||| || |||| || | || || ||||| ||||| | Sbjct 1285 CGGAGGCTTACCTTGGAAAGAAAGTAACTCATGCTGTCGTGACAGTTCCAGCCTATTTCA 1344 Query 550428 ATGACT-CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTT 550486 | | | | ||||| || || || || ||||||||| || || || || ||||| | Sbjct 1345 ACGGATGCCCAACGCCAGGCCACCAAGGATGCTGGAACCATCGCAGGTCTCAATGTGATG 1404 Query 550487 CGTATTATCAATGAACCTACTGCTGCTGC-ACTTGCATATGGACTTGATAAA 550537 | |||||||||||||||||||||||||| | |||||||||| ||||| ||| Sbjct 1405 AGGATTATCAATGAACCTACTGCTGCTGCGAATTGCATATGGTCTTGACAAA 1456 >seq124123 Length=5628 Score = 96.9 bits (106), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 865334 TAAAGCAAAAGGACCATGCTTTAATGCAGCTGCAGAATAACCTTCTGCATGAATATAAGA 865393 |||||| ||||||||||| |||||| || |||||| |||| ||||||| || ||||| || Sbjct 3680 TAAAGCTAAAGGACCATGTTTTAATTCACCTGCAGGATAAGCTTCTGCGTGCATATACGA 3621 Query 865394 TATTTCTTTTATTTTTAATGAACCTTCTTTAGCAAT 865429 |||||||||| |||||| | |||||| ||||| Sbjct 3620 AATTTCTTTTAATTTTAAAGCGCCTTCTAAGGCAAT 3585 >seq40083 Length=8795 Score = 96.9 bits (106), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 865334 TAAAGCAAAAGGACCATGCTTTAATGCAGCTGCAGAATAACCTTCTGCATGAATATAAGA 865393 |||||| ||||||||||| |||||| || |||||| |||| ||||||| || ||||| || Sbjct 5076 TAAAGCTAAAGGACCATGTTTTAATTCACCTGCAGGATAAGCTTCTGCGTGCATATACGA 5017 Query 865394 TATTTCTTTTATTTTTAATGAACCTTCTTTAGCAAT 865429 |||||||||| |||||| | |||||| ||||| Sbjct 5016 AATTTCTTTTAATTTTAAAGCGCCTTCTAAGGCAAT 4981 >seq45273 Length=11515 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || || || || || || || || || || || || || | || || || |||||| Sbjct 3119 GACGCTGTKATCACGGTGCCCGCTTACTTCAACGATTCTCAGAGGCAGGCGACGAAAGAT 3178 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || || ||| ||||| || || || || || || ||||||||||||||||| || || Sbjct 3179 GCCGGCGCTATCGCTGGTCTCAACGTGCTGCGCATCATCAATGAACCTACTGCAGCCGCG 3238 Query 550517 CTTGCATATGGACTTGATAA 550536 ||||| ||||| || ||||| Sbjct 3239 CTTGCCTATGGCCTCGATAA 3258 >seq40474 Length=22114 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || || || || || || || || || || || || || | || || || |||||| Sbjct 22027 GACGCTGTCATCACGGTGCCCGCTTACTTCAACGATTCTCAGAGGCAGGCGACGAAAGAT 21968 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 ||||| ||| ||||| || || || || || || ||||| ||||||||||| || || Sbjct 21967 GCTGGCGCTATCGCTGGTCTCAACGTGCTGCGCATCATCAACGAACCTACTGCAGCCGCG 21908 Query 550517 CTTGCATATGGACTTGATAA 550536 ||||| ||||| || ||||| Sbjct 21907 CTTGCCTATGGCCTCGATAA 21888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4018979078251160