Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_016164.1 Length=30332 Score E Sequences producing significant alignments: (Bits) Value seq121780 89.7 1e-13 >seq121780 Length=14741 Score = 89.7 bits (98), Expect = 1e-13 Identities = 133/180 (74%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 20789 CCAGCGTCGGTTCGCGGCCATGCGATAGCTGGAAGGTTTCGCGCAGCTTC--ATCAGCTT 20846 || ||||||| |||||||| ||| || |||| | || || | | | | |||||| Sbjct 1078 CCGGCGTCGGCTCGCGGCCCTGCTCGTGCAGGAAC-TGGCG-GCTGGTGCGGACCAGCTT 1135 Query 20847 GTGGAGCTTTTCAAGCGAATGGATCGGCACGCGGATCATGCGATCT-GATGTGTCGATCG 20905 || || | | || | | ||||| ||| | ||||||| |||| || ||| | |||||| Sbjct 1136 GTTGATCGTCTCGATCATATGGACCGGGATGCGGATCGTGCGGGCTTGATCGG-CGATCG 1194 Query 20906 CGCGGCAGATCGCTTGCCTGATCCACCA-GTAGCTGTAGGTACTGAACTTGTAGCCACGG 20964 ||| |||||| |||||||||||||| || || |||||| |||||||||||||| ||| Sbjct 1195 AGCGCGTGATCGCCTGCCTGATCCACCAGGTCGC-GTAGGTGCTGAACTTGTAGCCGCGG 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96716224761552