Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq122304 86.0 1e-11 seq121303 86.0 1e-11 >seq122304 Length=34685 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||| Sbjct 3049 TGGCGCGCCCGGCAGGATTCGAACCTGCGACCCCAAGCTTAGAAGGCTCGTGCTCTATCC 3108 Query 16181 -ACTGAGCTAAGAGCGC 16196 ||||||||| | |||| Sbjct 3109 GACTGAGCTACGGGCGC 3125 >seq121303 Length=33816 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 16121 TGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTATCC 16180 |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||| Sbjct 2180 TGGCGCGCCCGGCAGGATTCGAACCTGCGACCCCAAGCTTAGAAGGCTCGTGCTCTATCC 2239 Query 16181 -ACTGAGCTAAGAGCGC 16196 ||||||||| | |||| Sbjct 2240 GACTGAGCTACGGGCGC 2256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 908872650750880