Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq115183 179 7e-40 seq121756 172 1e-37 >seq115183 Length=152922 Score = 179 bits (198), Expect = 7e-40 Identities = 290/417 (70%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 22939 TATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGA 22998 ||||| || ||||||| ||| || ||||||||| ||||||| ||||||||||| Sbjct 132660 TATTTGCCGCCGCGGTCGCGGTACGACACTTCGCACACTTCATCGCTTTCAAAGAACAAC 132601 Query 22999 ATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAAC 23058 || ||||| || ||||| || ||||| ||| ||||| || ||||||||||||||| Sbjct 132600 ATCTGTGCACACCCTTCACCGGCGTAAATCTTGGCCGGCAGCGGGGTGGTATTGGAAAAC 132541 Query 23059 TCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCG 23118 ||||| || | ||||| ||| || ||||||||||| || ||||| |||||||||||| Sbjct 132540 TCCAGGGTGACGTGGCCTTCCCACTCGGGTTCCAGCGGAGTTACGTTCACGATGATGCCG 132481 Query 23119 CAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAG 23178 ||||| ||||| || |||||| || || || || || || ||||| |||| Sbjct 132480 CAACGGGCATAAGTACTTTTGCCCAGACACATGGTCAACACACTGCGAGGAATACGGAAG 132421 Query 23179 TGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTTT 23238 | || |||| ||||| |||||| || |||||||| || | | ||| Sbjct 132420 TACTCAACCGTGCGGGCCAGCGCGAAAGAATTGGGCGGAATAATGCACACATCACCG--- 132364 Query 23239 GGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTA 23298 ||| | | ||||| | ||| ||| ||| || || || | | Sbjct 132363 ---ACGAAATCC---ACGAAGGATTTTTCATCGAAGGCCTTGGGGTCCACGATGGTCGAG 132310 Query 23299 TTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTG 23355 || | ||||||||||| |||||||||||| | ||||| | ||||||||| |||||| Sbjct 132309 TTGATGTTGGTGAAAATCTTGAATTCGTTGGCACAACGCACATCGTAGCCATAGCTG 132253 >seq121756 Length=20875 Score = 172 bits (190), Expect = 1e-37 Identities = 306/438 (70%), Gaps = 19/438 (4%) Strand=Plus/Minus Query 22935 CATGTATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAA 22994 ||| || |||||| ||||||||||||| |||||| || | || | ||| Sbjct 17728 CATATACTTCCCTGCGCGGTCGGCGTAGCTCGTCTCGCACGGCTCGTTCCCTTTCAGGAA 17669 Query 22995 CAG-AATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGG 23053 ||| || | | ||| ||| || ||||||||| || ||| || ||||| || | Sbjct 17668 CAGGAACTGGCACGCGCCCT-CGTTGGCGTAGATCTTGGCGGGGAGCGGCGTGGTGTTCG 17610 Query 23054 AAAACTCCAGAGTAAGCGAGCCTTTCC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATG 23112 | || ||||| || | || ||| ||| | | || |||||||| |||||||| || ||| Sbjct 17609 AGAATTCCAGCGTCA-CGTGCCCCTCCCAGCCGGGCTCCAGCGGTGTGACGTTCACAATG 17551 Query 23113 ATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATG 23172 |||||||| |||||||| |||||||||||||||||||| || | ||||| ||||| | | Sbjct 17550 ATGCCGCACCGCGCATAGGTCGATTTGCCGAGGCAGATCACCAGCACGTCGCGCGGCACG 17491 Query 23173 TTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTG 23231 ||| | |||| || ||||| ||||| ||||||||||||||||| || | | | Sbjct 17490 CGGAAATATTCCACGGTCCGCGCCAGCGCGAAGCTGTTCGGCGGAATGATGCACACGTCG 17431 Query 23232 GCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAAC 23291 | | || || || ||||| ||| ||| ||||| ||| || ||||| | Sbjct 17430 GTC-TTGCGATCG---------ACGAAGCTGTTCGCGGCGAAATCCTTGGGGTCGACCAG 17381 Query 23292 CGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAA--CGAATATCGTAGCCG 23349 || |||| | ||||||||||| |||||| |||| | |||| || || |||||| Sbjct 17380 TGCATTATCGACGTTGGTGAAAATCTTGAACTCGT--CGGCAACGCGCGCGTCATAGCCG 17323 Query 23350 TAGCTGGAAACACCGTAG 23367 ||| ||| | |||||| Sbjct 17322 TAGGAGGACAGGCCGTAG 17305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895404773126720