Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq106062 86.0 2e-12 >seq106062 Length=20311 Score = 86.0 bits (94), Expect = 2e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 41762 TAGCTAAAGAGTTTGATTGCCCTGTTTTCTGTTTATCGCAGTTAAGCCGAAAGGTTGAGG 41821 |||| ||||| || || |||||| || |||||| ||| | | || | | || | Sbjct 6206 TAGCAAAAGAATTAAATATTCCTGTTATCGCTTTATCTCAGCTGAATCGTAGTTTAGAAG 6147 Query 41822 ATAGAGCAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAACAAG 41881 | | ||||||| || ||| ||||| |||||||||||||| || ||| ||||||| Sbjct 6146 CTCGTACAGATAAACGTCCAGTGATGTCGGATTTGCGTGAATCAGGTGCAATTGAACAAG 6087 Query 41882 ATGCCAATACGATTTTATTTATTTATCGTGATGAGGTTTA 41921 |||| || ||| |||||||||||||||||||| || Sbjct 6086 ATGCTGATCTCATTGCTTTTATTTATCGTGATGAGGTGTA 6047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147973205963992