Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq106062 93.3 9e-15 >seq106062 Length=20311 Score = 93.3 bits (102), Expect = 9e-15 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 25032 GAAGTATCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATG 25091 ||| |||| |||||||| || | ||| | || |||||||| ||| ||| | Sbjct 6240 GAAATATCTGAAATTTCCCGTTCTTTAAAAGAGCTAGCAAAAGAATTAAATATTCCTGTT 6181 Query 25092 ATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAG-ACAGGATAAGCGCCCAATTAA 25150 ||||| ||||| ||||| || || || | ||| | |||| |||| || ||| | | Sbjct 6180 ATCGCTTTATCTCAGCTGAATCGTAGTTTAGAAGCTCGTACAG-ATAAACGTCCAGTGAT 6122 Query 25151 CTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATA 25210 || || ||||| || || || || || ||||| ||||||||||| || || || || || Sbjct 6121 GTCGGATTTGCGTGAATCAGGTGCAATTGAACAAGATGCTGATCTCATTGCTTTTATTTA 6062 Query 25211 CCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGG 25270 || || || |||||| | || |||| ||||| | || |||||||| |||| Sbjct 6061 TCGTGATGAGGTGTATCATGAAGATTCTCCTGATAAAGGTAAAGCAGAGATTATTATTGC 6002 Query 25271 CAAACACAGGAATGG 25285 || || ||||||| Sbjct 6001 AAAGCATCGGAATGG 5987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101294394244224