Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq121915 190 8e-44 >seq121915 Length=6272 Score = 190 bits (210), Expect = 8e-44 Identities = 1082/1723 (63%), Gaps = 69/1723 (4%) Strand=Plus/Plus Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCGTCCACC 15398 || || || || || |||| || | || ||||||||||| | | || || ||| Sbjct 1349 TTCGGACAGGGTCGACCAACAGTACCACACACCATGTCCCATACGACTACCCCATCGACC 1408 Query 15399 AGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTTA 15458 | | | || | ||| ||||| | || ||||| ||||| || || ||||| |||||| Sbjct 1409 TGCTGGTCGCGGGCAATCATCTCCGCAGACAGGCGGGTGTGAATGCCAGACCAGGCGTTA 1468 Query 15459 TGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATTC 15518 | | || || || ||| || || || |||||| | ||| || ||||| || Sbjct 1469 CGGCGAGGATCGCCGGCGGCGTTTGTCATGATGCTCCAGATGATAAACTCATTCGCCGCA 1528 Query 15519 GCCGGACGCTGAAAGATGTTCGTG---TTGTTGCCATCCAAGCAACCCTTTAGCTCGATG 15575 | || |||| || | |||| ||||||||||||| | |||| | | |||| Sbjct 1529 TCTGGTCGCTCGAACAA---CGTGACATTGTTGCCATCCATGGCACCCGTCCGAGCGATC 1585 Query 15576 ACAGCGACACGATCTGAT-GGAAGCGTCACGGAATAATCGTGCCGGTTGGCTTCGCCGGA 15634 || ||| || ||| || || ||| |||| ||| || ||| ||| | Sbjct 1586 ACCGCGTTCCGG-CTGCCCGGTAGGCGCACCCAATAGTCGC-----TTCGCTCCGCTGCT 1639 Query 15635 TGACT-----CCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGA 15689 | ||| |||| | | | | ||| | ||||| ||| | ||| ||||| ||||| Sbjct 1640 TCACTAAGATCCCAACCCTCGGTTAAGCCGACATCCTCCATGTGGTTGAGGACATGCTGA 1699 Query 15690 ACAAACTCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCG 15749 || || ||||||||| |||||| | || ||||| | ||||| || || || || || Sbjct 1700 ACGAATTCCCGCTTCGGCCGCATGTTTGCCGAGAATTATCCGCGGATACGCTCAATTGCA 1759 Query 15750 CCCCGAAACACGCCACTATTATAGAATTCCGCTTCGCCTAAGCCGTGAAGGCCGAGCTTA 15809 |||| |||| ||| || || | ||| |||| | | ||||| |||||| | Sbjct 1760 CCCCTGAACAGCCCAGAGTTGTAAGACTCCTTTTCGTCGAGCCCGTGGCCGCCGAGAAGA 1819 Query 15810 TGGCCTTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTC 15869 || | | | ||| || || |||| | |||||||| | |||| | || || Sbjct 1820 TGAGCCTGTGTCTTGAGAACCTCTGCGAAGATTTCGATCTGTCCACGCAGGCCGGCATTT 1879 Query 15870 TGCTCGCACGGAATGATATTCATGCGGCGAC--CTTTGCCGACGTTGGACTTCCA-AGAA 15926 |||||||| || | || |||||| || | ||| | || ||| || |||| Sbjct 1880 TGCTCGCAGGGTACAATGCTCATGCAGCTGCGGCTTCTCGAACCTTGAGCTGATTGAGAA 1939 Query 15927 TTCGCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGG 15986 | | |||| | ||| |||||||||||||| ||||| || ||| | || ||||| || | Sbjct 1940 GTGGTTCAATTACATGTTGAGCCAAATGGCGAACTACCGGCACGGCGACGCCATCACCAG 1999 Query 15987 TCAGGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAG-CCCATG 16045 || || || || ||||| ||||| | || | | || || || | | || ||||| Sbjct 2000 CGAGATGATAGGCTTCGTTATAGTTTTTCGGCAAGGTATATTCTTC-GTCGAGACCCATC 2058 Query 16046 AGGCGCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTTGTCACGTTGCACAACT 16105 | |||||||||||||| || || ||||| || |||| | | | || || Sbjct 2059 AAACGCGCCGTTTCGCGCGAGGAAATGAGGCGGGAACGAATGCGATTCCCATCAACCACA 2118 Query 16106 AAGATTGACTGCCGACTTGAACCGCCAGCCGGAGTGCGGAGACAACCCGAGATATCATCA 16165 | ||| ||| || ||||| || || || ||||| | ||| |||| | ||| || Sbjct 2119 ACGATAACCTGGCGCGACGAACCTCCCGCGGGTGTGCGCAAACACCCCGCAAGATCGTCG 2178 Query 16166 AATCGAATTTCCGCGCGCTGCACCTTGCGTTTGA---ATTCGTCGAGACGTGTGCGCTTG 16222 || || |||||||||||||| | ||| | || |||| || |||||||| Sbjct 2179 AAACGTATTTCCGCGCGCTG------GTATTTCACACCATCTTCGACGCGAGTGCGCTTA 2232 Query 16223 TAAATTCCGCCAACCATGCGCTTGGCC--GATTGCTTCGCGAGGTTGACCTTGGCCCGGT 16280 || | | |||| ||||| || ||| | ||||||| | ||||| || ||| Sbjct 2233 TACACTGCGCCTACCAT--TCTACGCCCAGCGCGCTTCGCCGCTTCAACCTTCGCGAGGT 2290 Query 16281 TGATATCG--CTCATCATTCGAAGAAGCCGCGCCGTCTCTTCGCGGGTGTGCCACTCGAC 16338 | ||||| |||| | || || || |||||| | |||||||||| || Sbjct 2291 T--TATCGGCGACATCTGACCTAGTAGTTTCGTCGTCTCAGCCGCTGTGTGCCACTTAAC 2348 Query 16339 GCCTTGCGGATTCTCTTCAATGATATCGGCAAAGGTCGTGTTGCGTCTTGGCGGTTCGGG 16398 || ||||| | ||||||| || ||||||||| |||||||| | |||| ||| Sbjct 2349 GCTCTGCGGCTCGTCTTCAACGAGATCGGCAAACACAGTGTTGCGATGTCGCGGAGTGGG 2408 Query 16399 AAGATGCCACCATATCCAAT-----TTGCCCTACTCTTTGGCGGCAGCTTACCCTGAGCG 16453 | | |||||| | ||| | || ||| ||| || || | | | || Sbjct 2409 CATGTTCCACCACAGCCACTGACCCTTAGCCTCCTCATT-----CACCCGGTCATATGCC 2463 Query 16454 TTTTGCAAGGCCCGCGTATGCCACGGATCATACGGTTGTGCGGATAACAGTTCCTCGGGG 16513 || || | |||||||| | || || |||| | ||||| ||| || Sbjct 2464 GCCTGTAATCCACGCGTATGGAAGGGCTCGATCGGTCCAGGGGATACCAGCGAGTCATCA 2523 Query 16514 ATGAAAACATCCTCTCGCACAGCAACGATAAAAAGTCGCGGGCGCGACTGCGGAACGAAT 16573 || ||| || || | || |||||| |||||| || || ||||| || || ||||| Sbjct 2524 ATCTCAACCTCGTCCCTTACGCCAACGACAAAAAGGCGTGGACGCGAATGAGGTACGAAA 2583 Query 16574 AGCTCCGCGTCGATTATGAGTGCGCCGAATCTGTACGACGCTTGT-TGC-AGAGCCCCGC 16631 ||| | |||||||| | || || || | | ||| || || | ||| | | || Sbjct 2584 AGCGCGGCGTCGATCACCAGGGCACCATAGCGGTA--ACCGTTCTCTGCGAAGGTTTGGC 2641 Query 16632 AAATCGTAGCGAAGTCCTTGCCGCCATGCGATGTGAGCGTGCCGCATACATTCTCTAGCA 16691 | || | |||||||||| ||| ||| || ||||| || |||||||| ||| Sbjct 2642 AGATTGCTTCGAAGTCCTTCCCGTTATGGCTGGTCAGCGTTCCAGTAACATTCTCGAGCG 2701 Query 16692 CGATGATTTCCGGTGCGCGCCCATCCGCCATTGTGGCCTTCATTAGTTTCCAGAAAGGCC 16751 ||| | |||||||| || || || ||| | ||||| | | ||| ||||| Sbjct 2702 CGACCACCCGAGGTGCGCGACCTTCGGCGATTAGGAGCTTCACCAAGTCCCAAAAAGGAT 2761 Query 16752 AAAACGTACCGGAGCGCTCCCCCTTTAAGCCCGCNNNNNNNNNNNNNNNNNNNNNGTCTT 16811 | || || || |||||||| ||| | ||| || ||||| Sbjct 2762 AGAAGGTGCCAGAGCGCTCGCCCCGCAGGCCGGCGCCACCGCCAGCGAGCGACAGGTCTT 2821 Query 16812 GACACGGAAATGAAGCCCAAACCAAGTGCGCGGAACCAGGAAGGTCTTTCGGGGCCAAAG 16871 | || || || || |||||| | | || ||| ||||| || || | | ||| Sbjct 2822 GGCAAGGGAACGACGCCCAAGCGAGGTCGGCGATTCCAGGCAGATCGCTTGTCTCCACTT 2881 Query 16872 AGCCTACGTCGGCAACCTTCA--AC----------TCCTGGTCGCCCCAATTGGTGCAAT 16919 | | ||| ||||||| | || |||| || ||||||| || | Sbjct 2882 TCCGGATATCGCCAACCTTGAGGACGGTTTGGCCGTCCTTGT---CCCAATTAGTTTGGT 2938 Query 16920 AAGCCTTGCCCTTCTTGTGGTCGAAGTCGTTTGCAAAGAGGCACTGCCAGCCTTGCCCAA 16979 | ||| ||||||||| |||||||| |||| || | ||||| |||| | | ||| | Sbjct 2939 AGGCCGCGCCCTTCTTAAAATCGAAGTCATTTGAGAAAACGCACTTCCAGGCATCCCCCA 2998 Query 16980 GCCCGGCTCGCGCCATGCCCCCACCCGCAAAGAATTCGTAGAA 17022 |||| || |||||||| || || || || || || |||||||| Sbjct 2999 GCCCAGCGCGCGCCATCCCGCCGCCAGCGAAAAACTCGTAGAA 3041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185256234707816