Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq121807 95.1 5e-15 seq121347 95.1 5e-15 >seq121807 Length=11772 Score = 95.1 bits (104), Expect = 5e-15 Identities = 208/305 (68%), Gaps = 19/305 (6%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||| ||||| || || ||||||||||||||||| ||||| ||| | ||| ||| Sbjct 2646 CGTTAACAAGGTAATTCTCGTCGGCAATCTCGGGCGTGACCCCGAATCGCGCACGTTCCA 2587 Query 10032 GAGCGGCGACGCAATCTCC--AACATCCGCCTCGCTACGACCGATCGCTACAAGGA---C 10086 || |||| |||| | ||| | ||| |||| ||| | || | ||||| | Sbjct 2586 GAATGGCG--GCAAGGTGGTGAACCTGCGCATCGCCACGTCGGAAACGTGGAAGGATCGC 2529 Query 10087 AAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCA-CCG--CGTCAGCTTCTTCGGC 10143 || ||||||||| ||||| ||||||||||| || || | |||| || Sbjct 2528 AAC---AGCGGCGAGCGCAAGGAGCGCACCGAATGGCATTCGGTCGCGATCTTCAACGAG 2472 Query 10144 CGCCTCGCCGAGATCGTCGACGAG---TACCTGCGCAAGGGCGCGCCGGTCTACATCGAG 10200 | ||||| | ||||| ||| | ||||||||||| || |||||| |||||| Sbjct 2471 GGGCTCGC---AAACGTCGCGGAGCGTTTTCTGCGCAAGGGATCGAAGGTCTATATCGAG 2415 Query 10201 GGCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAG 10260 |||| ||| ||||| |||||||||||| | |||||||| ||||| ||||||| Sbjct 2414 GGCCAGCTCCAGACGCGTAAGTGGCAGGATCAGCAGGGCCAGGACCGCTATTCGACCGAA 2355 Query 10261 ATCGT 10265 ||||| Sbjct 2354 ATCGT 2350 >seq121347 Length=11177 Score = 95.1 bits (104), Expect = 5e-15 Identities = 208/305 (68%), Gaps = 19/305 (6%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||| ||||| || || ||||||||||||||||| ||||| ||| | ||| ||| Sbjct 9128 CGTTAACAAGGTAATTCTCGTCGGCAATCTCGGGCGTGACCCCGAATCGCGCACGTTCCA 9187 Query 10032 GAGCGGCGACGCAATCTCC--AACATCCGCCTCGCTACGACCGATCGCTACAAGGA---C 10086 || |||| |||| | ||| | ||| |||| ||| | || | ||||| | Sbjct 9188 GAATGGCG--GCAAGGTGGTGAACCTGCGCATCGCCACGTCGGAAACGTGGAAGGATCGC 9245 Query 10087 AAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCA-CCG--CGTCAGCTTCTTCGGC 10143 || ||||||||| ||||| ||||||||||| || || | |||| || Sbjct 9246 AAC---AGCGGCGAGCGCAAGGAGCGCACCGAATGGCATTCGGTCGCGATCTTCAACGAG 9302 Query 10144 CGCCTCGCCGAGATCGTCGACGAG---TACCTGCGCAAGGGCGCGCCGGTCTACATCGAG 10200 | ||||| | ||||| ||| | ||||||||||| || |||||| |||||| Sbjct 9303 GGGCTCGC---AAACGTCGCGGAGCGTTTTCTGCGCAAGGGATCGAAGGTCTATATCGAG 9359 Query 10201 GGCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAG 10260 |||| ||| ||||| |||||||||||| | |||||||| ||||| ||||||| Sbjct 9360 GGCCAGCTCCAGACGCGTAAGTGGCAGGATCAGCAGGGCCAGGACCGCTATTCGACCGAA 9419 Query 10261 ATCGT 10265 ||||| Sbjct 9420 ATCGT 9424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197330598015672