Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq176411 109 4e-19 seq48326 104 2e-17 seq74841 84.2 2e-11 seq4323 84.2 2e-11 >seq176411 Length=6678 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||||||||||| ||| | | | || ||||| ||| Sbjct 4823 TGGAGGGTCGATTCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGC 4882 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | ||||||||| || || |||||||| || || || || ||||| Sbjct 4883 TTGCCTGCAAAGATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTCCTGGATTTTA 4942 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| ||| | ||||| | || || || || || | || |||||||| Sbjct 4943 GCCTTCACATTTTTGATGGTGTCGCTGGGCTCGACCTCCAGGGTTATGGTCTTGCCGGTG 5002 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 5003 AGGGTCTTAACGAAGATTTGCAT 5025 >seq48326 Length=57257 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || || ||||| || | | || | | | || || | || Sbjct 53301 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGGCCGTCTTCGAGCTG 53242 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| || ||||||||||| || || || || || Sbjct 53241 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT 53182 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| |||| | |||||| | || ||||| || |||| ||||| ||||| Sbjct 53181 TGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTGATGGTTTTACCGGT 53122 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| ||||||||| Sbjct 53121 GAGTGTCTTGACAAAAATCTGCATG 53097 >seq74841 Length=4471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| || ||||| || | || || | | | || || | ||| Sbjct 2963 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGC 2904 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || || || | |||||| || || || |||||||||||||| || |||||||| Sbjct 2903 TTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 2845 >seq4323 Length=113087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| || ||||| || | || || | | | || || | ||| Sbjct 37148 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTGCGGCCGTCTTCGAGCTGC 37207 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || || || || | |||||| || || || |||||||||||||| || |||||||| Sbjct 37208 TTGCCGGCGAAAATAAGACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCCTGAATTTT 37266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395336213924988