Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq121339 96.9 2e-15 >seq121339 Length=12531 Score = 96.9 bits (106), Expect = 2e-15 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 47674 TGGGCTTCTGTGGCTACTTCCTGATGGTGCGCGACCTGATGAATCACAGCCGTGAAAC-T 47732 |||||||| || ||||||||||| || |||| | || || ||| | ||| Sbjct 249 TGGGCTTCCCCGGATACTTCCTGATCGTTGCCGACTTCATCAA-ATGGGCCAAGGAACGC 191 Query 47733 GGCATTCCTGTCGGGCCAGGTCGTGGTTCCTCTGCCGGTTCTCTGGTGGCGTGGTGCATC 47792 | ||| || |||||||| || || ||||| |||||||| ||||||| |||| | Sbjct 190 GACATCCCGGTCGGGCCGGGGCGCGGTTCGGGCGCCGGTTCGGTGGTGGCATGGTCGCTG 131 Query 47793 GGCATAACCAACGTCGATCCTATCCGTCACGGTCTTCTGTTTGAGCGTTTCATCAACCCT 47852 ||| ||| || ||||||| ||||| | ||| || ||||| ||||| ||| |||| || Sbjct 130 ACCATTACCGACCTCGATCCGATCCGCCTCGGCCTGCTGTTCGAGCGCTTCCTCAATCCC 71 Query 47853 GA--ACGTCTCGACTTACCGGATGCGGATCTGGACTTCAGCCAGGCACGTCGTCATGAGG 47910 || |||||||| | |||||| ||| | |||||| || | | || || |||| Sbjct 70 GAGCGCGTCTCGA--TGCCGGATTTCGATATCGACTTCTGCGAAACGCGGCGCGTGGAGG 13 Query 47911 TGATC 47915 ||||| Sbjct 12 TGATC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329646369420240