Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq48326 105 5e-18 seq9079 105 5e-18 seq74841 87.8 1e-12 seq4323 87.8 1e-12 seq176411 82.4 6e-11 >seq48326 Length=57257 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| |||||| || || ||| |||||| || || ||||| || || Sbjct 53097 GCCGCCACGAAGTCGCAGCACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 53038 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| |||||||| || || ||||| || || | || Sbjct 53037 AAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 52978 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC----CT 48714 || ||||||||||| |||||| |||||| | | | || || ||| | Sbjct 52977 AATTCCCTCCTTGTCTTGGATCTTTGCTTTTAC-GTTCTC---GATCGTGTCGCTGGGTT 52922 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || |||| ||| || || || || |||||||| || ||||| |||||||| Sbjct 52921 CAACTTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 52870 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| || | ||| || ||| ||| || ||||| ||||| |||||||| | || Sbjct 53315 AGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTGCGG 53256 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| ||||||| |||| ||| ||| Sbjct 53255 CCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCTTCC 53196 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || | ||| || || | ||| Sbjct 53195 TTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGCGTG 53136 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||||||||| Sbjct 53135 ATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTGCAT 53098 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||| | || || || || ||||| ||||| ||||||||||| || | || Sbjct 52859 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACG- 52801 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 ||| || | |||||| ||||| || ||||| ||||| || || | |||| || ||| Sbjct 52800 --GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 52743 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | || || | ||| || || | ||| Sbjct 52742 TTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAGCGTG 52683 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| | || || |||||||||||||| Sbjct 52682 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 52645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | ||||||| || | || || || || || ||||||||||| || || Sbjct 53781 GCCGCCACGAAGCCGCAGGACAAGGTGGAGGGTCGATTCCTTCTGAATATTGTAGTCGGA 53722 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || ||||||||||| || ||||| || || |||||||| |||| || Sbjct 53721 GAGAGTACGCCCATCTTCCAACTGCTTGCCTGCAAAGATGAGACGCTGTTGGTCCGGTGG 53662 Query 48659 AACGCCCTCCTTGTC 48673 || |||||||||||| Sbjct 53661 AATGCCCTCCTTGTC 53647 >seq9079 Length=83715 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| |||||| ||||| ||| |||||| ||||| ||||| || || Sbjct 2879 GCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 2938 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| |||||||| || || ||||| || || | || Sbjct 2939 GAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGG 2998 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| ||| || | | | || | || || Sbjct 2999 GATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAAC 3058 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| |||||||| || |||||||| || || || |||||||| Sbjct 3059 TTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||| | || || || || ||||| ||||| ||||||||||| || | || Sbjct 3345 AGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGTACGG 3404 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || ||||| ||||| || || | |||| || ||| Sbjct 3405 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCCTTCC 3464 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | || || ||| || || | ||| Sbjct 3465 TTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAGCGTG 3524 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| | || || |||||||||||||| Sbjct 3525 ATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTGCAT 3562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||||||||| || || ||| | || |||| ||||||||||| || ||||| Sbjct 2460 TCCTTCTGAATATTGTAGTCGGAGAGAGTGCGCCCGTCCTCCAACTGCTTGCCTGCAAAG 2519 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || |||||||| |||| |||| |||||||||||| Sbjct 2520 ATGAGACGCTGTTGGTCCGGTGGAATGCCCTCCTTGTC 2557 >seq74841 Length=4471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 3179 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 3120 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || |||||||| || | |||| |||||||||||| Sbjct 3119 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTC 3082 >seq4323 Length=113087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 36932 TCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 36991 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || |||||||| || | |||| |||||||||||| Sbjct 36992 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTC 37029 >seq176411 Length=6678 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||| | ||| | || |||| ||||||||||| || ||||| Sbjct 4835 TCCTTCTGAATGTTGTAATCGGCGAGAGTGCGGCCGTCCTCCAACTGCTTGCCTGCAAAG 4894 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || |||||||| || | |||| |||||||||||| Sbjct 4895 ATGAGACGCTGTTGGTCTGGTGGAATGCCCTCCTTGTC 4932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380031888000132