Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq121358 183 4e-41 >seq121358 Length=9149 Score = 183 bits (202), Expect = 4e-41 Identities = 424/627 (68%), Gaps = 34/627 (5%) Strand=Plus/Minus Query 84471 CGACGATTGACTTCCAGACCGCCTCGGTGTTCAGGCCCAGTTCACC--CAGGCGCTTCTT 84528 ||| ||| || ||||| ||||| ||||||||| || ||| | ||| |||| | Sbjct 5997 CGAGGATCGAATTCCACACCGCATCGGTGTTCTTCGCC--TTCGCGATCAGCAGCTTTTC 5940 Query 84529 CAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGC 84588 ||| | ||||||| || ||||||||||| ||||| || ||||| || |||| || Sbjct 5939 CAGATACGGGTTCTTCACCGCGAACGAGCCGGACAGCGTTTTGTGGGTATAGATGTTCGC 5880 Query 84589 CGGGATCGGCTCGATCGACGGCGAGGTGCCTCCGCAGAGGATCGAGGACGAGGCGTTGGG 84648 ||||||||||||||| | | |||||||| ||||||| ||||||| ||| ||| | || Sbjct 5879 CGGGATCGGCTCGATGCAGGCGGAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGG 5820 Query 84649 CGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCGTGCCTTCCATGTC--CGGCGCC--- 84703 ||| | |||| |||| || ||| |||| || | | ||||||| ||||| | Sbjct 5819 CGCGATCGCCATCTTGCAGGAGAAACGCT---CCATCACGCCCATGTCGGCGGCGTCGGG 5763 Query 84704 ----TCGCCGCGCTCCTTGCCCAGCAGCAGGGAAGCCGCGTCGGCCTG---CTTGCGCAT 84756 ||| |||||| | ||| ||| || || |||||||||| |||| || Sbjct 5762 GCAGGGGCCACGCTCCACCGCAAGCTGCATCGAGGCTTCGTCGGCCTGCGCCTTG---AT 5706 Query 84757 GTGGGCGAACAGTTCCAGGTTCAGCCGGC--GGGCGGCGTGACTCTCGAACGGGATGTCC 84814 ||| ||| | || |||| || | | | || | | ||||||||| | | Sbjct 5705 GTGCTTGAAGATGCGCATGTTC-CACGACTTCGCCATCGCG-CCCTCGAACGGCAGCCCG 5648 Query 84815 AGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGGCCCACCGACCGTTCGCGCACG 84874 || ||| || | ||||||||||| | || ||| || || ||||| || |||||| || Sbjct 5647 CGCGCCTGAAGGAAGGAGTGGAAGCCCATCACGCCGAGACCGACCGAACGCTCGCGCCCG 5588 Query 84875 GCGCTGTAGGCGGCGCGGTGCATCTCGTCCGGCGCGT---TGTCGATGAACACCTGGAGG 84931 ||| ||||| ||||| | |||| ||||| ||| ||||| | |||| || Sbjct 5587 GCGGAATAGGCCGCGCGCTCCATC---CCCGGCTCGTGCCGCTCGATATAATCCTGCAGC 5531 Query 84932 CAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGGTGATCCCGCCACTCCGGC 84991 ||||| || | |||| || ||| |||||||| || | ||| |||||| | Sbjct 5530 ACATTGTCGAGGAAACGCATCACGTCCTCGATGAAATTCTTCTCGTCCTTCCACTCGTCC 5471 Query 84992 CACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGGTCCGCATCTTGCCGAAGAT- 85050 ||| ||||| ||||| ||||||||||| || || ||||| |||||| |||| Sbjct 5470 CACGTCTCGATGTTGAGCGAAGAGAGGCAGCACACCGCCGTCCGGTCATTGCCG-AGATG 5412 Query 85051 GTCGCGGCCCGAGCCCAGCATGATCTC 85077 |||||| |||| |||| ||||||| Sbjct 5411 GTCGCGCCCCGTCGGCAGCGTGATCTC 5385 Score = 179 bits (198), Expect = 5e-40 Identities = 494/748 (66%), Gaps = 22/748 (3%) Strand=Plus/Minus Query 86071 GTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCATCCGCGTCTCGATCAGCAGGCGCCA 86130 |||| |||| |||||| |||||||| ||| | ||| ||||||| |||| | | Sbjct 5312 GTCGGCGAAGACGATGTACGGCTCGCCGGTCGCAAGCCGGGTCTCGACCAGCTTCTGGAA 5253 Query 86131 CAGTTCGCGCGCC-CG--CTCGACGCGGATCACCTCGCCGGTCTTGGGCGAGCGCAGGGC 86187 ||| ||||||| || || | |||||| || |||| ||||||||| ||| | Sbjct 5252 CAGCGCGCGCGCATCGACCTTGCCGCGGA---CCGAGCCGTCCTTGGGCGATTTCAGCTC 5196 Query 86188 GAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGACGGCGTTGTG 86247 | || | | ||||||||| ||| |||||| |||||| || ||| | | ||| Sbjct 5195 CCATTCCGCGCCGTCGCGCATCGCTTCCATGAAGGCGTCGGGGATCAGCACGCCATGGTG 5136 Query 86248 CAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCAGTAGGCTTGCGGGCCGTGATGAACTC 86307 |||||| ||||||||| |||||| || || |||||| || ||| || Sbjct 5135 CAGGTTCAGCGCCTTGCGGTTGAAATCGCCGG-AG--GGTTTGCGGATTTCGAGGAATTC 5079 Query 86308 GCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGCGTTGGAGCCCCGGCGCGTGCCGCC 86367 ||| |||||||| ||| || || ||| ||| ||||| || ||| ||| Sbjct 5078 CTCGATCTCCGGGTGCGAGATATCGAGGTAGCAGGCCGCCGAGCCGCGCCGCAGCGAGCC 5019 Query 86368 TTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGCCATGAACGGGATCACGCCGGTCGA 86427 ||||||| || || |||||| || ||| || ||| ||||| | ||| | | Sbjct 5018 CTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCGCACGAAGGGGATGATCCCGCTGGT 4959 Query 86428 CTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGCCGCGCAGGGCGCCGTAATAGGAGC 86483 || || | |||| | | ||||| | ||||||| ||| |||||| || Sbjct 4958 CTTG----CCGTTGAGGCCGACCGGCTCGCCGATCCCGCGCACATTGCCCCAATAGGTGC 4903 Query 86484 CGATGCCGCCGCCCATCGACGAGAGCCAGATGACCTCGTCATAGTGCTCGGAGATCGACT 86543 ||||||||||||| || | |||||| | | |||| || ||| ||| | Sbjct 4902 CGATGCCGCCGCCGCGTGAGGCGAGCCACACGTTTTCGTTCCAGGTGTCGACGATGCCGT 4843 Query 86544 CGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGGCCGCGCGCGGACCCGC 86603 |||||||| | || ||||| |||| ||||||||| || ||| | | |||| Sbjct 4842 TCAGGCTGTCCGGCACCGAATTGAGGTAGCAACTGATCGGCAGCCCACGCCCCGTGCCGC 4783 Query 86604 CGTTCGACAGCAGGGGCGTGGCGAACATGAACCAGAGGTTCGAGACATAGTCGTAGAGCC 86663 |||||||||||| ||||| || ||||||||| || ||||||| ||| ||||| |||| Sbjct 4782 CGTTCGACAGCACTGGCGTCGCCGGCATGAACCACAGCTTCGAGATATAATCGTACAGCC 4723 Query 86664 GCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCACTCG-CGCGCGCGAAGGCCTCCTGG 86722 |||| ||||| |||| || || || |||||| | || |||| |||| |||| Sbjct 4722 GCTGCGCGTGCGCGGCATCGTCGGCATAGGCCG-AGGCGACGCGGACGAACAGGTCCT-- 4666 Query 86723 GGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACGGAGGGTCTGAAGGGTGAAGTCGTCG 86782 | || | || || |||||||||||||| || || || | | ||| ||| | Sbjct 4665 -GATAGGTCTCGCCCGGCAGCAGATAGCGGTCGTTCAGCGTATCCTTGCCGAAATCGGTG 4607 Query 86783 AGCAGGGCGTCGCGGGTGAGATCGATCT 86810 ||||| || |||||| | |||||| || Sbjct 4606 AGCAGCGCATCGCGGCTATGATCGACCT 4579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688461049348800