Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq121358 190 4e-43 seq121800 118 2e-21 seq121320 86.0 1e-11 seq194974 84.2 4e-11 seq194973 84.2 4e-11 seq122295 84.2 4e-11 seq110423 84.2 4e-11 seq77353 84.2 4e-11 >seq121358 Length=9149 Score = 190 bits (210), Expect = 4e-43 Identities = 392/572 (69%), Gaps = 26/572 (5%) Strand=Plus/Minus Query 113546 CCAGGAAGGGGTTCTTCACGGGGAAGGAGCCCGACAGCGTCTTATGCAGATAGGCGTTGG 113605 |||| | ||||||||||| | ||| ||||| |||||||| || || |||| ||| | Sbjct 5940 CCAGATACGGGTTCTTCACCGCGAACGAGCCGGACAGCGTTTTGTGGGTATAGATGTTCG 5881 Query 113606 CGCGCCACGGCTCGATCGACGGCGAGGTATTGCCGCAGAGGATAGACGACGACGCGTTGG 113665 | | ||||||||| | | ||||| |||||||| ||| || ||||||| | | Sbjct 5880 CCGGGATCGGCTCGATGCAGGCGGAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCG 5821 Query 113666 GAGCGATCGCCATCTTGTGGGCGAAGCGCTCGCCCGTGCCGATCATGTCCGGCGCCTCGC 113725 | ||||||||||||||| || ||| ||||| | ||| |||||| | || ||| Sbjct 5820 GCGCGATCGCCATCTTGCAGGAGAAACGCTCCATCACGCC---CATGTCGGCGGCGTCGG 5764 Query 113726 CGCGTTCGGCGCCCAGCTTCAGAG-AAGCGGCATC-------CGCCAGGGTGCG----GA 113773 || || ||| ||| || | |||| ||||| || | | |||| || Sbjct 5763 GGCA---GGGGCCACGCTCCACCGCAAGCTGCATCGAGGCTTCGTCGGCCTGCGCCTTGA 5707 Query 113774 TGTGCTTGAAGAT-CGCACGGTTCACGT-TGCGAGCCTTATGCGAC-TCGAACCGGATCA 113830 ||||||||||||| |||| | | |||| | || || | ||| | |||||| | | | Sbjct 5706 TGTGCTTGAAGATGCGCATGTTCCACGACTTCG--CCATC-GCGCCCTCGAACGGCAGCC 5650 Query 113831 TATGCTTCTGAAGATAGGCGTGGAAGCCCAGCAGGCCCAGGCCGACCGAACGCTCCTGCG 113890 || |||||| ||| ||||||||||| || ||| || |||||||||||||| || Sbjct 5649 CGCGCGCCTGAAGGAAGGAGTGGAAGCCCATCACGCCGAGACCGACCGAACGCTCGCGCC 5590 Query 113891 TAGCCGAGTAGATCGCGTAGGCCAACGCCGGCGGAGCGTTG-TCGATGAACACCTGGAGG 113949 || || ||| |||| ||| | ||||| | | | ||||| | |||| || Sbjct 5589 CGGCGGAATAGGCCGCGCGCTCCATCCCCGGCTC-GTGCCGCTCGATATAATCCTGCAGC 5531 Query 113950 CAGTTGTCCAGCATACGCATCAGGTCTTCGATGAAGTGTGGGTCATCGACCCACTCGTCG 114009 ||||| || | |||||||| ||| |||||||| | || || ||||||||| Sbjct 5530 ACATTGTCGAGGAAACGCATCACGTCCTCGATGAAATTCTTCTCGTCCTTCCACTCGTCC 5471 Query 114010 AACTTCTCGGCGTTGACGCTCGACAGGCAGCAGACCGCCGTACGCTTCTTGCCTTGATCA 114069 || ||||| ||||| || |||||||| |||||||| || | ||||| ||| Sbjct 5470 CACGTCTCGATGTTGAGCGAAGAGAGGCAGCACACCGCCGTCCGGTCATTGCCGAGATGG 5411 Query 114070 TCGCGCCCGGTCGCCAGCGTGATCTCGGTGCA 114101 |||||||| |||| ||||||||||||| |||| Sbjct 5410 TCGCGCCCCGTCGGCAGCGTGATCTCGCTGCA 5379 >seq121800 Length=12389 Score = 118 bits (130), Expect = 2e-21 Identities = 206/295 (70%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGTCG 110976 |||||||| ||||||||||||| ||| ||| |||| | ||| ||| || || || || Sbjct 2762 CCGGTCGATCCGAAGCCGCCCGCGCCGCGCACGGTATCGTCGAGCGAGGCGACCTCGGCG 2703 Query 110977 AAACGGATGCGGACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGATG 111036 | ||| | |||||| |||| ||| || ||||| | |||||| | | Sbjct 2702 AGCGTCGCGCGCAGCACTGGCGCGGGGACGAGCTGCGCGATGCGCTGGCCGCGCGTCACC 2643 Query 111037 ACGAACGGATTGCG--GCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGC 111094 |||||| | ||| |||| ||||| ||||||||||| | ||||||||||||||||| Sbjct 2642 TCGAACG--TGGCGTCGCCGAGGTTGGCGAGGATCACCTTCACCTCGCCGCGATAGTCGC 2585 Query 111095 TGTCGACGGTACCGGGCGAATTCAGGACAGTGA-TAGACGACTTGGCGGCGAGGCCCGAG 111153 |||||| || ||||||| || ||| || | | || ||| |||||||| ||| Sbjct 2584 TGTCGATTGTGCCGGGCGTGTTGAGGCAGGTCACGCCATGA-TTGAGCGCGAGGCCGGAG 2526 Query 111154 CGCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGTCG 111208 ||||| || || |||| || || | || | ||||| || || |||||||| Sbjct 2525 CGCGGGCGCACCTGCACCTCATATCCTTCGGGAATGGCGATCGCGAAGCCGGTCG 2471 >seq121320 Length=18040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 19 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAAT 78 Query 133023 CCCTCCCCCGCATCCAC 133039 || ||||||| |||| Sbjct 79 CCTGTCCCCGCAACCAC 95 >seq194974 Length=16517 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 5636 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 5577 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 5576 CCTATCCCCGCAACCA 5561 >seq194973 Length=41900 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 31019 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 30960 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 30959 CCTATCCCCGCAACCA 30944 >seq122295 Length=42044 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 31019 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 30960 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 30959 CCTATCCCCGCAACCA 30944 >seq110423 Length=9600 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 |||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| Sbjct 3415 GATGCGGGGTGGAGCAGTTTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 3474 Query 133020 AATCCCTCCCCCGC 133033 ||||| ||||||| Sbjct 3475 AATCCTACCCCCGC 3488 >seq77353 Length=87670 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 |||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| Sbjct 46084 GATGCGGGGTGGAGCAGTTTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 46143 Query 133020 AATCCCTCCCCCGC 133033 ||||| ||||||| Sbjct 46144 AATCCTACCCCCGC 46157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893582028845280