Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq121358 185 1e-41 >seq121358 Length=9149 Score = 185 bits (204), Expect = 1e-41 Identities = 493/746 (66%), Gaps = 18/746 (2%) Strand=Plus/Minus Query 86176 GTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCACGC-GCGTCTCGATCAGCAGGCGCC 86234 |||| |||| |||||| |||||||| ||| ||| || | ||||||| |||| | Sbjct 5312 GTCGGCGAAGACGATGTACGGCTCGCCGGTC-GCAAGCCGGGTCTCGACCAGCTTCTGGA 5254 Query 86235 ACAGGTCGCGCGCCCGTTCCATGCGGATCACCTCGCCCGTCTTGGGCGAGCGCAGGGCGA 86294 |||| ||||||| || ||| | ||| ||| ||||||||| ||| | Sbjct 5253 ACAGCGCGCGCGCATCGACCTTGCCGCGGACCGAGCCGTCCTTGGGCGATTTCAGCTCCC 5194 Query 86295 AGTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGACCGCATTGTGCA 86354 | || | | ||||||||| ||| |||||| |||||| || || ||| ||||| Sbjct 5193 ATTCCGCGCCGTCGCGCATCGCTTCCATGAAGGCGTCGGGGATCAGCACGCCATGGTGCA 5134 Query 86355 GGTTGGTGATCTTGCGGTTGTGGTCCCCGCCCGTCGGCTTGCGCGCGGTGATGAACTCGC 86414 |||| |||||||||| || ||| | || ||||| || ||| || Sbjct 5133 GGTTCAGCGCCTTGCGGTTGAAATCGCCG---GAGGGTTTGCGGATTTCGAGGAATTCCT 5077 Query 86415 GGATTTCGGGGTGGTGGATGTCCAGGTAGACGGCGTTGGAGCCCCGGCGCGTACCGCCCT 86474 ||| || ||||| ||| || |||||| ||| ||||| || ||| ||||| Sbjct 5076 CGATCTCCGGGTGCGAGATATCGAGGTAGCAGGCCGCCGAGCCGCGCCGCAGCGAGCCCT 5017 Query 86475 GGCTGACGGCCAGGATCAGGCGGTCGTCCACCGCCATGAACGGGATGACGCCGGTCGACT 86534 |||||| ||||| |||||| ||| ||| || ||| ||||||| ||| | | || Sbjct 5016 GGCTGATCGCCAGCGTCAGGCTGTCCATCACGCGCACGAAGGGGATGATCCCGCTGGTCT 4957 Query 86535 GCGAACCCTTGGAGGTCTTC----TCGCCCAGGCCGCGCAGGGCGCCGTAATAGGAGCCG 86590 || | |||| | | ||||| | ||||||| ||| |||||| |||| Sbjct 4956 TG----CCGTTGAGGCCGACCGGCTCGCCGATCCCGCGCACATTGCCCCAATAGGTGCCG 4901 Query 86591 ATGCCGCCGCCCATCGACGACAGCCAGATGACCTCGTCATAGTGCTCGGAGATCGACTCG 86650 ||||||||||| || | ||||| | | |||| || ||| ||| | Sbjct 4900 ATGCCGCCGCCGCGTGAGGCGAGCCACACGTTTTCGTTCCAGGTGTCGACGATGCCGTTC 4841 Query 86651 CGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGGCCACGGGCCGAGCCGCCG 86710 |||||||| | || ||||| |||| ||||||||| ||||| ||| ||||||| Sbjct 4840 AGGCTGTCCGGCACCGAATTGAGGTAGCAACTGATCGGCAGCCCACGCCCCGTGCCGCCG 4781 Query 86711 TTCGACAGCAGCGGGGTGGCGTACATGAACCAGAGGTTCGAGACGTATTCGTACAGACGC 86770 |||||||||| || || || ||||||||| || ||||||| || |||||||| ||| Sbjct 4780 TTCGACAGCACTGGCGTCGCCGGCATGAACCACAGCTTCGAGATATAATCGTACAGCCGC 4721 Query 86771 TGGCCGTGCTCGGCGTCATCCGCAAAGGCCGCACTCG-CGCGCGCGAAGGCCTCCTGGGG 86829 || ||||| |||| || || ||| |||||| | || |||| |||| |||| | Sbjct 4720 TGCGCGTGCGCGGCATCGTCGGCATAGGCCG-AGGCGACGCGGACGAACAGGTCCT---G 4665 Query 86830 GGAAGTTTCCCCAGGCAGCAGATAGCGTTCACGGAGGGTCTGAAGGGTGAAGTCGTCGAG 86889 | || || || |||||||||||||| || || || | | ||| ||| ||| Sbjct 4664 ATAGGTCTCGCCCGGCAGCAGATAGCGGTCGTTCAGCGTATCCTTGCCGAAATCGGTGAG 4605 Query 86890 CAGGGCGTCGCGGGTGAGATCGATCT 86915 ||| || |||||| | |||||| || Sbjct 4604 CAGCGCATCGCGGCTATGATCGACCT 4579 Score = 161 bits (178), Expect = 1e-34 Identities = 370/554 (67%), Gaps = 20/554 (4%) Strand=Plus/Minus Query 84636 GGTTCTTGACCTGGAACGAACCCGAGAGGGTCTTGTGCAGGAAGGTGTTGGCGCGGTTGG 84695 ||||||| ||| |||||| || || || || ||||| || |||| || || | | Sbjct 5931 GGTTCTTCACCGCGAACGAGCCGGACAGCGTTTTGTGGGTATAGATGTTCGCCGGGATCG 5872 Query 84696 GCTCGATCGACGGCGAAGCGCCGCCGCAGAGGATCGACGAGGAGGCGTTGGGGGCCACCG 84755 ||||||| | | || | ||||||||||| |||||| || ||| | || || | || Sbjct 5871 GCTCGATGCAGGCGGAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCG 5812 Query 84756 CCAGCTTGTGGGCGAAGCGCTCGCCCGAGCCTTCCATGTCAGGGGCCTCG---------C 84806 ||| |||| || ||| ||||| | ||| |||||| | ||| ||| | Sbjct 5811 CCATCTTGCAGGAGAAACGCTCCATCACGCC---CATGTCGGCGGCGTCGGGGCAGGGGC 5755 Query 84807 CGCGCTCGGCGCCCAGGACCAGCGACGCCGCGTCGGCCTTGCGGCGC-ATGTGGCGGAAG 84865 | ||||| | | || || ||| || ||||||||| ||| | ||||| |||| Sbjct 5754 CACGCTCCACCGCAAGCTGCATCGAGGCTTCGTCGGCCT-GCGCCTTGATGTGCTTGAAG 5696 Query 84866 ATGGTCTTATTGAGCGTCTCGGCCGCCATGCTCTCGAACGGGATGTCGAGCGACTGGAGC 84925 ||| | | || || || ||| | || ||||||||| | || ||| ||| || Sbjct 5695 ATGCGCATGTTCCACGACTTCGCCATCGCGCCCTCGAACGGCAGCCCGCGCGCCTGAAGG 5636 Query 84926 AGCGAGTGGAAGCCCAGCAGGCCCAGGCCCACCGAGCGCTCGCGCACGGCGCTGTAGGAG 84985 | ||||||||||||| || ||| || || ||||| ||||||||| ||||| |||| Sbjct 5635 AAGGAGTGGAAGCCCATCACGCCGAGACCGACCGAACGCTCGCGCCCGGCGGAATAGGCC 5576 Query 84986 GCCCGGTGCATCTCGTCCGGCGCGT---TGTCGATGAACACCTGGAGGCAGTTGTCCAGC 85042 || || | |||| ||||| ||| ||||| | |||| || ||||| || Sbjct 5575 GCGCGCTCCATC---CCCGGCTCGTGCCGCTCGATATAATCCTGCAGCACATTGTCGAGG 5519 Query 85043 ATGCGCATCAGGTCTTCGATGAAGGTCGGGTGATCCTTCCATTCGACCCACTTTTCGGCG 85102 | ||||||| ||| |||||||| || | |||||||| ||| ||||| | ||| | Sbjct 5518 AAACGCATCACGTCCTCGATGAAATTCTTCTCGTCCTTCCACTCGTCCCACGTCTCGATG 5459 Query 85103 TTGACGCTCGACAGGCAGCAGACGGCCGTGCGCATCTTGCCGAACACGTCGCGGCCGGTG 85162 |||| || |||||||| || ||||| || ||||||| |||||| || || Sbjct 5458 TTGAGCGAAGAGAGGCAGCACACCGCCGTCCGGTCATTGCCGAGATGGTCGCGCCCCGTC 5399 Query 85163 CCCAGCATGATCTC 85176 |||| ||||||| Sbjct 5398 GGCAGCGTGATCTC 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714030544435200