Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq121358 188 1e-42 seq120791 86.0 9e-12 >seq121358 Length=9149 Score = 188 bits (208), Expect = 1e-42 Identities = 426/631 (68%), Gaps = 42/631 (7%) Strand=Plus/Minus Query 84597 CGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCCCAGTTCGCC--CAGGCGCTTCTT 84654 ||| |||||| ||||| ||||| ||||||| | || ||||| ||| |||| | Sbjct 5997 CGAGGATCGAATTCCACACCGCATCGGTGTTCTTCGCC--TTCGCGATCAGCAGCTTTTC 5940 Query 84655 CAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGC 84714 ||| | ||||||| || ||||||||||| ||||| || ||||| || |||| || Sbjct 5939 CAGATACGGGTTCTTCACCGCGAACGAGCCGGACAGCGTTTTGTGGGTATAGATGTTCGC 5880 Query 84715 CGGGATCGGCTCGATCGACGGCGAGGTGCCCCCGCAGAGGATCGAGGACGAGGCGTTGGG 84774 ||||||||||||||| | | |||||||| ||||||| ||||||| ||| ||| | || Sbjct 5879 CGGGATCGGCTCGATGCAGGCGGAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGG 5820 Query 84775 CGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCGTGCCTTCCATGTC--CGGCGCC--- 84829 ||| | |||| |||| || ||| |||| || | | ||||||| ||||| | Sbjct 5819 CGCGATCGCCATCTTGCAGGAGAAACGCT---CCATCACGCCCATGTCGGCGGCGTCGGG 5763 Query 84830 ----TCGCCGCGCTCCTTGCCCAGCAGCAGGGAAGCCGCGTCGGCCTGC------TTGCG 84879 ||| |||||| | ||| ||| || || ||||||||||| || | Sbjct 5762 GCAGGGGCCACGCTCCACCGCAAGCTGCATCGAGGCTTCGTCGGCCTGCGCCTTGATGTG 5703 Query 84880 CATGTGGACGAACA-GTTCCAGG--TTCAGCCGGCGGGCGGCGTGACTCTCGAACGGGAT 84936 | || || | || |||||| | ||| ||| || | | ||||||||| | Sbjct 5702 CTTGAAGATGCGCATGTTCCACGACTTC-GCCATCGCG--------CCCTCGAACGGCAG 5652 Query 84937 GTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGGCCCACCGACCGTTCGCG 84996 | || ||| || | ||||||||||| | || ||| || || ||||| || ||||| Sbjct 5651 CCCGCGCGCCTGAAGGAAGGAGTGGAAGCCCATCACGCCGAGACCGACCGAACGCTCGCG 5592 Query 84997 CACGGCGCTGTAGGCGGCGCGGTGCATCTCGTCCGGCGCGT---TGTCGATGAACACCTG 85053 | ||||| ||||| ||||| | |||| ||||| ||| ||||| | |||| Sbjct 5591 CCCGGCGGAATAGGCCGCGCGCTCCATC---CCCGGCTCGTGCCGCTCGATATAATCCTG 5535 Query 85054 GAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGGTGATCCCGCCACTC 85113 || ||||| || | |||| || ||| |||||||| || | ||| |||||| Sbjct 5534 CAGCACATTGTCGAGGAAACGCATCACGTCCTCGATGAAATTCTTCTCGTCCTTCCACTC 5475 Query 85114 CGGCCACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGGTCCGCATCTTGCCGAA 85173 |||| ||||| ||||| ||||||||||| || || ||||| |||||| | Sbjct 5474 GTCCCACGTCTCGATGTTGAGCGAAGAGAGGCAGCACACCGCCGTCCGGTCATTGCCG-A 5416 Query 85174 GAT-GTCGCGGCCCGAGCCCAGCATGATCTC 85203 ||| |||||| |||| |||| ||||||| Sbjct 5415 GATGGTCGCGCCCCGTCGGCAGCGTGATCTC 5385 Score = 165 bits (182), Expect = 1e-35 Identities = 490/748 (66%), Gaps = 22/748 (3%) Strand=Plus/Minus Query 86197 GTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCATCCGCGTCTCGATCAGCAGGCGCCA 86256 |||| |||| |||||| |||||||| ||| | ||| ||||||| |||| | | Sbjct 5312 GTCGGCGAAGACGATGTACGGCTCGCCGGTCGCAAGCCGGGTCTCGACCAGCTTCTGGAA 5253 Query 86257 CAGTTCGCGCGCC-CG--CTCGACGCGGATCACCTCGCCGGTCTTGGGCGAACGCAGGGC 86313 ||| ||||||| || || | |||||| || |||| ||||||||| ||| | Sbjct 5252 CAGCGCGCGCGCATCGACCTTGCCGCGGA---CCGAGCCGTCCTTGGGCGATTTCAGCTC 5196 Query 86314 GAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGACGGCGTTGTG 86373 | || | | ||||||||| ||| |||||| |||||| || ||| | | ||| Sbjct 5195 CCATTCCGCGCCGTCGCGCATCGCTTCCATGAAGGCGTCGGGGATCAGCACGCCATGGTG 5136 Query 86374 CAGATTGGTGATCTTGCGGTTCTGGTCGCCGCCGGTCGGCTTGCGGGCCGTGATGAACTC 86433 ||| || ||||||||| |||||| || | |||||| || ||| || Sbjct 5135 CAGGTTCAGCGCCTTGCGGTTGAAATCGCCGGAGG---GTTTGCGGATTTCGAGGAATTC 5079 Query 86434 GCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGCGTTGGAGCCCCGGCGCGTGCCGCC 86493 ||| |||||||| ||| || || ||| ||| ||||| || ||| ||| Sbjct 5078 CTCGATCTCCGGGTGCGAGATATCGAGGTAGCAGGCCGCCGAGCCGCGCCGCAGCGAGCC 5019 Query 86494 TTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGCCATGAACGGGATCACGCCGGTCGA 86553 ||||||| || || |||||| || ||| || ||| ||||| | ||| | | Sbjct 5018 CTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCGCACGAAGGGGATGATCCCGCTGGT 4959 Query 86554 CTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGCCGCGCAGGGCGCCGTAGTAGGAGC 86609 || || | |||| | | ||||| | ||||||| ||| | |||| || Sbjct 4958 CTTG----CCGTTGAGGCCGACCGGCTCGCCGATCCCGCGCACATTGCCCCAATAGGTGC 4903 Query 86610 CGATGCCGCCGCCCATCGACGAGAGCCAGATAACCTCGTCATAGTGCTCGGAGATCGACT 86669 ||||||||||||| || | |||||| | |||| || ||| ||| | Sbjct 4902 CGATGCCGCCGCCGCGTGAGGCGAGCCACACGTTTTCGTTCCAGGTGTCGACGATGCCGT 4843 Query 86670 CGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGGCCGCGCGCGGACCCGC 86729 |||||||| | || ||||| |||| ||||||||| || ||| | | |||| Sbjct 4842 TCAGGCTGTCCGGCACCGAATTGAGGTAGCAACTGATCGGCAGCCCACGCCCCGTGCCGC 4783 Query 86730 CGTTCGACAGCAGGGGCGTGGCGAACATGAACCAGAGGTTCGAGACATAGTCGTAGAGCC 86789 |||||||||||| ||||| || ||||||||| || ||||||| ||| ||||| |||| Sbjct 4782 CGTTCGACAGCACTGGCGTCGCCGGCATGAACCACAGCTTCGAGATATAATCGTACAGCC 4723 Query 86790 GCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCACTCG-CGCGCGCGAAGGCCTCCTGG 86848 |||| ||||| |||| || || || |||||| | || |||| |||| |||| Sbjct 4722 GCTGCGCGTGCGCGGCATCGTCGGCATAGGCCG-AGGCGACGCGGACGAACAGGTCCT-- 4666 Query 86849 GGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACGGAGGGTCTGAAGGGTGAAGTCGTCG 86908 | || | || || |||||||||||||| || || || | | ||| ||| | Sbjct 4665 -GATAGGTCTCGCCCGGCAGCAGATAGCGGTCGTTCAGCGTATCCTTGCCGAAATCGGTG 4607 Query 86909 AGCAGGGCGTCGCGGGTGAGATCGATCT 86936 ||||| || |||||| | |||||| || Sbjct 4606 AGCAGCGCATCGCGGCTATGATCGACCT 4579 >seq120791 Length=13055 Score = 86.0 bits (94), Expect = 9e-12 Identities = 172/248 (69%), Gaps = 13/248 (5%) Strand=Plus/Plus Query 149804 CTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATCCAGGTTGG 149863 ||||||||| ||||| ||||| || || | || ||| | |||||| |||| || | Sbjct 240 CTCGCCCTTCCGGACATGACCGCCAAGCCCAAGCGCCTGGCGGAAGGTCAACCAGCTTTG 299 Query 149864 GTTGGTGTAACCGCGCTCCTGCGCGGCGGCCCACAGGAGGACCACGTTGATCCCGGTGTA 149923 | | | | |||||||| ||||| ||||||||| | ||||||||| |||| || Sbjct 300 GCCCGAGAACCCGCGCTCGATGACGGCGCCCCACAGGATCAGCACGTTGATTCCGGAATA 359 Query 149924 ---GCGCTGGCCCGTCACGCGGCGCGGATAGATCGCCATGCCAGCCGAGGC-GCCGCCGG 149979 |||||| ||| || |||||| ||||| | ||| | | ||||||| Sbjct 360 CCGGCGCTGTGTCGTGGCGTTGCGCGGC---ATCGCTAGCGGCGCCTTGACCGCCGCCGT 416 Query 149980 GAGCCGACCACGGCTTCAACCA-GGGACGCACGCCAGCGTCGAGCGCGGCGACGATCTTG 150038 | || |||||| | | ||| ||||| | | || || |||||| |||||| ||||||| Sbjct 417 G--CC--CCACGGTTGGACCCACGGGACACGC-CCGGCTTCGAGCTCGGCGATGATCTTG 471 Query 150039 TCGGTGAT 150046 |||||||| Sbjct 472 TCGGTGAT 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707990908392320