Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq121358 179 5e-40 >seq121358 Length=9149 Score = 179 bits (198), Expect = 5e-40 Identities = 424/631 (67%), Gaps = 42/631 (7%) Strand=Plus/Minus Query 83754 CGACGATCGACTTCCAGACCGCCTCGGTGTCCAGGCCCAGTTCGCC--CAGGCGCTTCTT 83811 ||| |||||| ||||| ||||| ||||||| | || ||||| ||| |||| | Sbjct 5997 CGAGGATCGAATTCCACACCGCATCGGTGTTCTTCGCC--TTCGCGATCAGCAGCTTTTC 5940 Query 83812 CAGCCAGCGGTTCTTGACGGCGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGC 83871 ||| | ||||||| || ||||||||||| ||||| || ||||| || |||| || Sbjct 5939 CAGATACGGGTTCTTCACCGCGAACGAGCCGGACAGCGTTTTGTGGGTATAGATGTTCGC 5880 Query 83872 CGGGATCGGCTCGATCGACGGCGAGGTGCCCCCGCAAAGGATCGAGGACGAGGCGTTGGG 83931 ||||||||||||||| | | |||||||| ||||| | ||||||| ||| ||| | || Sbjct 5879 CGGGATCGGCTCGATGCAGGCGGAGGTGCCGCCGCAGATGATCGAGATCGACGCGGTCGG 5820 Query 83932 CGCCACGGCCAGCTTGTGGGCGAACCGCTCGCCCGTGCCTTCCATGTC--CGGCGCC--- 83986 ||| | |||| |||| || ||| |||| || | | ||||||| ||||| | Sbjct 5819 CGCGATCGCCATCTTGCAGGAGAAACGCT---CCATCACGCCCATGTCGGCGGCGTCGGG 5763 Query 83987 ----TCGCCGCGCTCCTTGCCCAGCAGCAGGGAAGCCGCATCGGCCTGC------TTGCG 84036 ||| |||||| | ||| ||| || || | ||||||||| || | Sbjct 5762 GCAGGGGCCACGCTCCACCGCAAGCTGCATCGAGGCTTCGTCGGCCTGCGCCTTGATGTG 5703 Query 84037 CATGTGGACGAACA-GTTCCAGG--TTCAGCCGGCGGGCGGCGTGACTCTCGAACGGGAT 84093 | || || | || |||||| | ||| ||| || | | ||||||||| | Sbjct 5702 CTTGAAGATGCGCATGTTCCACGACTTC-GCCATCGCG--------CCCTCGAACGGCAG 5652 Query 84094 GTCCAGCATCTGGAGCAGCGAGTGGAAGCCGAGCAGGCCCAGGCCCACCGACCGTTCGCG 84153 | || ||| || | ||||||||||| | || ||| || || ||||| || ||||| Sbjct 5651 CCCGCGCGCCTGAAGGAAGGAGTGGAAGCCCATCACGCCGAGACCGACCGAACGCTCGCG 5592 Query 84154 CACGGCGCTGTAGGCGGCGCGGTGCATCTCGTCCGGCGCGT---TGTCGATGAACACCTG 84210 | ||||| ||||| ||||| | |||| ||||| ||| ||||| | |||| Sbjct 5591 CCCGGCGGAATAGGCCGCGCGCTCCATC---CCCGGCTCGTGCCGCTCGATATAATCCTG 5535 Query 84211 GAGGCAGTTGTCCAGCATGCGCAGCAGGTCTTCGATGAAGGTCGGGTGATCCCGCCACTC 84270 || ||||| || | |||| || ||| |||||||| || | ||| |||||| Sbjct 5534 CAGCACATTGTCGAGGAAACGCATCACGTCCTCGATGAAATTCTTCTCGTCCTTCCACTC 5475 Query 84271 CGGCCACTTCTCGGCGTTGACGCTGGAGAGGCAGCAGACGGCGGTCCGCATCTTGCCGAA 84330 |||| ||||| ||||| ||||||||||| || || ||||| |||||| | Sbjct 5474 GTCCCACGTCTCGATGTTGAGCGAAGAGAGGCAGCACACCGCCGTCCGGTCATTGCCG-A 5416 Query 84331 GAT-GTCGCGGCCCGAGCCCAGCATGATCTC 84360 ||| |||||| |||| |||| ||||||| Sbjct 5415 GATGGTCGCGCCCCGTCGGCAGCGTGATCTC 5385 Score = 174 bits (192), Expect = 2e-38 Identities = 492/748 (66%), Gaps = 22/748 (3%) Strand=Plus/Minus Query 85354 GTCGATGAAGTGGATGTAGGGCTCGCCCGTCTGCATCCGCGTCTCGATCAGCAGGCGCCA 85413 |||| |||| |||||| |||||||| ||| | ||| ||||||| |||| | | Sbjct 5312 GTCGGCGAAGACGATGTACGGCTCGCCGGTCGCAAGCCGGGTCTCGACCAGCTTCTGGAA 5253 Query 85414 CAGTTCGCGCGCC-CG--CTCGACGCGGATCACCTCGCCGGTCTTGGGCGAGCGCAGGGC 85470 ||| ||||||| || || | |||||| || |||| ||||||||| ||| | Sbjct 5252 CAGCGCGCGCGCATCGACCTTGCCGCGGA---CCGAGCCGTCCTTGGGCGATTTCAGCTC 5196 Query 85471 GAACTCGGTGTCGTCGCGCACCGCGATCATGAACTCGTCGGTGACGTTGACGGCGTTGTG 85530 | || | | ||||||||| ||| |||||| |||||| || ||| | | ||| Sbjct 5195 CCATTCCGCGCCGTCGCGCATCGCTTCCATGAAGGCGTCGGGGATCAGCACGCCATGGTG 5136 Query 85531 CAGGTTGGTGATCTTGCGGTTCTGGTCGCCGCCGGTAGGCTTGCGGGCCGTGATGAACTC 85590 |||||| ||||||||| |||||| || | |||||| || ||| || Sbjct 5135 CAGGTTCAGCGCCTTGCGGTTGAAATCGCCGGAGG---GTTTGCGGATTTCGAGGAATTC 5079 Query 85591 GCGGATTTCCGGGTGGCTGATGTCCAGATAGACGGCGTTGGAGCCCCGGCGCGTGCCGCC 85650 ||| |||||||| ||| || || ||| ||| ||||| || ||| ||| Sbjct 5078 CTCGATCTCCGGGTGCGAGATATCGAGGTAGCAGGCCGCCGAGCCGCGCCGCAGCGAGCC 5019 Query 85651 TTGGCTGACGGCGAGAATCAGGCGATCGTCCACCGCCATGAACGGGATCACGCCGGTCGA 85710 ||||||| || || |||||| || ||| || ||| ||||| | ||| | | Sbjct 5018 CTGGCTGATCGCCAGCGTCAGGCTGTCCATCACGCGCACGAAGGGGATGATCCCGCTGGT 4959 Query 85711 CTGCGAACCCTTCGAGGTCTTC----TCGCCCAGGCCGCGCAGGGCGCCGTAGTAGGAGC 85766 || || | |||| | | ||||| | ||||||| ||| | |||| || Sbjct 4958 CTTG----CCGTTGAGGCCGACCGGCTCGCCGATCCCGCGCACATTGCCCCAATAGGTGC 4903 Query 85767 CGATGCCGCCGCCCATCGACGAGAGCCAGATGACCTCGTCATAGTGCTCGGAGATCGACT 85826 ||||||||||||| || | |||||| | | |||| || ||| ||| | Sbjct 4902 CGATGCCGCCGCCGCGTGAGGCGAGCCACACGTTTTCGTTCCAGGTGTCGACGATGCCGT 4843 Query 85827 CGCGGCTGTCCTCGATCGCGGTGAGGAAGCAGGAGATCGGCAGGCCGCGCGCGGACCCGC 85886 |||||||| | || ||||| |||| ||||||||| || ||| | | |||| Sbjct 4842 TCAGGCTGTCCGGCACCGAATTGAGGTAGCAACTGATCGGCAGCCCACGCCCCGTGCCGC 4783 Query 85887 CGTTCGACAGCAGGGGCGTGGCGAACATGAACCAGAGGTTCGAGACATAGTCGTAGAGCC 85946 |||||||||||| ||||| || ||||||||| || ||||||| ||| ||||| |||| Sbjct 4782 CGTTCGACAGCACTGGCGTCGCCGGCATGAACCACAGCTTCGAGATATAATCGTACAGCC 4723 Query 85947 GCTGGCCGTGCTCGGCGTCATCCGCGAAGGCCGCACTCG-CGCGCGCGAAGGCCTCCTGG 86005 |||| ||||| |||| || || || |||||| | || |||| |||| |||| Sbjct 4722 GCTGCGCGTGCGCGGCATCGTCGGCATAGGCCG-AGGCGACGCGGACGAACAGGTCCT-- 4666 Query 86006 GGCGAGCTTTCCCCAGGCAGCAGATAGCGTTCACGGAGGGTCTGAAGGGTGAAGTCGTCG 86065 | || | || || |||||||||||||| || || || | | ||| ||| | Sbjct 4665 -GATAGGTCTCGCCCGGCAGCAGATAGCGGTCGTTCAGCGTATCCTTGCCGAAATCGGTG 4607 Query 86066 AGCAGGGCGTCGCGGGTGAGATCGATCT 86093 ||||| || |||||| | |||||| || Sbjct 4606 AGCAGCGCATCGCGGCTATGATCGACCT 4579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699652890768640