Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq70405 102 2e-16 seq188574 98.7 2e-15 seq17548 95.1 2e-14 seq171013 93.3 8e-14 >seq70405 Length=8866 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||||| || ||||||||||||||||||||| ||||||||| ||||| | || Sbjct 3220 TGTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTG 3161 Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 || ||| ||||| | ||| | ||||||||| |||||||| || | || || || | || Sbjct 3160 ATTAGAC-TTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTCAATCT 3102 Query 213646 GGGACACCAGTAT 213658 | ||| | || || Sbjct 3101 GAGACTCAAGGAT 3089 >seq188574 Length=9004 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 |||||||||| | ||||||||||||||||||||| ||||||||| ||||| | || Sbjct 8569 TGTGTACTCCGCCACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTG 8628 Query 213587 GTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 || ||| ||||| | ||| | ||||||||| |||||||| || | || ||||| | || Sbjct 8629 ATTAGAC-TTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTCTCAATCT 8687 Query 213646 GGGACACCAGTAT 213658 | ||| | || || Sbjct 8688 GAGACTCAAGGAT 8700 >seq17548 Length=139630 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 |||||||||||| |||| | || || || || | || |||||||||||| |||| Sbjct 1886 GGGACACATGAGCGACCAGACACCATCTTCCTCCACGCGCTTCATGAACAGGTCTGGGAT 1945 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 ||| || || |||| ||||| | | | || || || | ||| || ||| Sbjct 1946 CCAGAGAGCATAAAACAAGTCCCGAGCTCGAGTTTCCTCTTTGCCCGTGTTCTTCTTCAG 2005 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || || || || |||||||| |||||||| ||||||| ||| |||||||| || ||||| Sbjct 2006 CTCAAGGAACTCGAAGATGTCTGCGTGCCAGGGCTCCAGGTACATGGCAAAAGCTCCCGG 2065 Query 213959 CCTCT 213963 ||||| Sbjct 2066 CCTCT 2070 >seq171013 Length=8497 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 8/140 (6%) Strand=Plus/Minus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||||| || ||||||||||||||||||||| ||||||||| ||||| | || Sbjct 3497 TGTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTG 3438 Query 213587 GTTTGACTT-TGCGTTGGCAGA-------ATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638 || ||||| | |||| |||| ||| ||||| |||||||| || | || ||| Sbjct 3437 ATTAGACTTGCGAGTTGCCAGAGCGGCCCATCTTTGTACAGCATGTATGGTGTGCCCGTC 3378 Query 213639 TCTAGCTGGGACACCAGTAT 213658 || | ||| ||| | || || Sbjct 3377 TCAATCTGAGACTCAAGGAT 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929261210690560