Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq188574 95.1 2e-14 seq70405 93.3 8e-14 >seq188574 Length=9004 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 221761 CTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATT 221820 ||| || || |||||||||||||||||||| || |||| || ||||||||||||||||| Sbjct 8584 CTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGATTAGACTTGCGATT 8643 Query 221821 GGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | || |||||||| ||||| | || ||| ||||| | ||||| Sbjct 8644 GCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTCTCAATCTGAG 8690 >seq70405 Length=8866 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 221747 GTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGA 221806 || |||| | || ||| || || |||||||||||||||||||| || |||| || ||| Sbjct 3219 GTGTACTCCACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCAAGGTTTTTCTGA 3160 Query 221807 TTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGA 221866 ||||||||||||||| || |||||||| ||||| | || ||| || || | |||| Sbjct 3159 TTAGACTTGCGATTGCAGGCATCCTTGTACAGCATGTATGGTGTGCCCGTTTCAATCTGA 3100 Query 221867 G 221867 | Sbjct 3099 G 3099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926579765512960