Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq122314 87.8 2e-12 seq81145 82.4 8e-11 seq70155 82.4 8e-11 >seq122314 Length=30329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 ||||| | | |||||| ||||||||||||||||||||||||||||| | ||||||| | Sbjct 5142 TCGGGGAGTGGCGCAGCCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGA 5201 Query 15461 ATCCTGTATTCCCGAC 15476 ||||||| | |||||| Sbjct 5202 ATCCTGTCTCCCCGAC 5217 >seq81145 Length=12080 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 15400 ATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCA 15459 |||||| ||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 10610 ATCGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCA 10669 Query 15460 AATCC 15464 ||||| Sbjct 10670 AATCC 10674 >seq70155 Length=1439 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 15400 ATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCA 15459 |||||| ||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 600 ATCGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCA 541 Query 15460 AATCC 15464 ||||| Sbjct 540 AATCC 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515220537696000