Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq124163 100 6e-16 >seq124163 Length=12495 Score = 100 bits (110), Expect = 6e-16 Identities = 227/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 38245 TAAAAAATGATCCATATGGACGTCGACATATTCTAAGTGCATGGAATGTTGGTGAGCTTG 38304 |||||| | |||| || ||| ||| ||| ||||||| |||||||| || || | Sbjct 5125 TAAAAACTAATCCTGATTCACGACGATTGATTGTAAGTGCTTGGAATGTAGGGGAATTAA 5066 Query 38305 ATGATATGGCTCTTCAACCATGTCATAGTTTTGTTCAATGGGTAGTTAGT-GATAATAAA 38363 || | ||||| | | ||||||||| | |||||| || |||| |||| | | Sbjct 5065 ATCAAATGGCCTTGCCGCCATGTCATTTACTGTTTCAATTT-TACATAGTTGATAGAACA 5007 Query 38364 CTAAGTTGTATTCTTACCCAACGCTCAGCAGATACATTCTTGGGAGTTCCACTGAATATC 38423 | |||| | |||||||| ||||||||| | || || || || || | ||||| Sbjct 5006 ATTTCCTGTAAATTGACCCAACGGTCAGCAGATGCTTTTTTAGGTGTACCTTTTAATATT 4947 Query 38424 ACATCATATTCAGTACTCACTCATATGATAGCACA--AATTACTGGATTAGAAGTTGGTG 38481 | || ||| | || | || |||||| | || | ||| || ||| | || || | Sbjct 4946 GCTTCTTATGCTTTATTAACGCATATGGTGGCTGAGCAATG--TGATTTAAAGGTAGGAG 4889 Query 38482 AATTTATCTGGAACGGTGGAGATTGTCATATTTACTTGAATCATATCGAACAAGTAAAAG 38541 ||||||| ||| || || ||||||||||||||| |||||| | || ||||| | | Sbjct 4888 AATTTATTTGGTCGGGAGGCGATTGTCATATTTACAATAATCATTTGGAGCAAGTTCACG 4829 Query 38542 AACAATTATCACGAGATACAAAAGAATTACCAAAATT 38578 | ||||| ||||| | | ||||||||| |||| Sbjct 4828 AGCAATTGTCACGTTCTCCTCGTGAATTACCACAATT 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1103691994015008