Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq124163 113 1e-20 >seq124163 Length=12495 Score = 113 bits (124), Expect = 1e-20 Identities = 316/483 (65%), Gaps = 4/483 (1%) Strand=Plus/Minus Query 45602 ATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAAT 45661 ||||||||| || | |||||||||||||||||||| ||| ||| ||||| | || || Sbjct 5315 ATTTATGAATTGTTATGGTTTTTAAAAGGCGATACTAATATTCAATATTTAAATGATCAT 5256 Query 45662 GGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGC 45721 ||||| || || ||||| || ||||| |||||| | || || | || || || || || Sbjct 5255 GGTGTTACTATATGGGATGAATGGGCAGATGAACATGGAGAATTAGGACCCATTTATGGA 5196 Query 45722 GCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTG--CGGCGG 45779 ||||||||| ||| | | | ||| || | |||| ||||| | || | Sbjct 5195 AAGCAATGGCGTCATTGGCAGTGTGTTGATGGCCGGATCATCGATCAAATAGACCGAC-- 5138 Query 45780 TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACG 45839 || || || || || || || | || || || ||| |||| || || ||||| | Sbjct 5137 TCCTTGAGACTATAAAAACTAATCCTGATTCACGACGATTGATTGTAAGTGCTTGGAATG 5078 Query 45840 TGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCG 45899 | | | || ||||| ||||| |||||||||| ||||| |||||| | | Sbjct 5077 TAGGGGAATTAAATCAAATGGCCTTGCCGCCATGTCATTTACTGTTTCAATTTTACATAG 5018 Query 45900 CGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGC 45959 || | | || || | | | || || || | ||| | ||| |||| | | Sbjct 5017 TTGATAGAACAATTTCCTGTAAATTGACCCAACGGTCAGCAGATGCTTTTTTAGGTGTAC 4958 Query 45960 CGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCG 46019 | ||||| || ||| ||||| | || || |||||||| || | ||||| || | Sbjct 4957 CTTTTAATATTGCTTCTTATGCTTTATTAACGCATATGGTGGCTGAGCAATGTGATTTAA 4898 Query 46020 ATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAAC 46079 | || || ||| | |||| | || ||||| ||| | ||||| |||||| |||| | Sbjct 4897 AGGTAGGAGAATTTATTTGGTCGGGAGGCGATTGTCATATTTACAATAATCATTTGGAGC 4838 Query 46080 AAG 46082 ||| Sbjct 4837 AAG 4835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157384951873976