Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq195083 302 1e-77 seq193734 136 1e-27 >seq195083 Length=147271 Score = 302 bits (334), Expect = 1e-77 Identities = 182/187 (97%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 46906 GGCGACCTCGCGGGTTTTCGC--TATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTT 46963 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 53760 GGCGAC-TCGCGGGTTTTCGCCGTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTT 53818 Query 46964 CTTCTTCGTCATAACTTAATGTTTTTATTTAAAATACCCTCTGAAAAGAAAGGAAACGAC 47023 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 53819 CTTCTTCGTCATAACTTAATGTTTTTATT-AAAATACCCTCTGAAAAGAAAGGAAACGAC 53877 Query 47024 AGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGA 47083 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 53878 AGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCG-TTCCTTTCTCTGTTTTTGTCCGTGGA 53936 Query 47084 ATGAACA 47090 ||||||| Sbjct 53937 ATGAACA 53943 >seq193734 Length=145444 Score = 136 bits (150), Expect = 1e-27 Identities = 75/75 (100%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 46755 ACGTTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGT 46814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138783 ACGTTAAGTTGATGCAGATCAATTAATACGATACCTGCGTCATAATTGATTATTTGACGT 138724 Query 46815 GGTTTGATGGCCTCC 46829 ||||||||||||||| Sbjct 138723 GGTTTGATGGCCTCC 138709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150217594490016