Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq115183 122 1e-22 seq122300 100 4e-16 >seq115183 Length=152922 Score = 122 bits (134), Expect = 1e-22 Identities = 222/320 (69%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 123074 TCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTGCC 123133 || || ||||| || ||||||||||| || || ||||| ||||| || || || || ||| Sbjct 137657 TCTTGCCAGCTCTACCAGCGCAGTGCCGATATTTTCCTGGGCGTGCCCTTCAATATCGCC 137598 Query 123134 TCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACTTC 123193 ||||| | |||| |||||| | || ||||| || ||| ||| ||||| ||| Sbjct 137597 AGCTACGCCTTGCTGACTCACATGATGGCGCAGCAATGTGATCTGGAAGTGGGTGATTTC 137538 Query 123194 GTGTGGACGGGTGGGGA-TGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGCA 123252 | ||||| ||||| || ||| || ||||||||||||||| | || || ||||| | || Sbjct 137537 ATCTGGACTGGTGGTGACTGT-CACCTGTACTCCAACCACTTCGAACAAGCAGAGCTACA 137479 Query 123253 GTTAACTCGCGAACCTCATCCGTTACCACAA-CTGCGGATTAAACGTCGTCCGGATTCTA 123311 | | | ||||| |||| || |||| ||| ||| ||| || || || | | Sbjct 137478 GCTCTCGCGCGAGCCTC-GCCCCTACCCCAAGCTGACGATCAAGCGCAAACCCGCCAGTC 137420 Query 123312 TCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTA 123371 | ||||| || ||| ||||| |||||| | || ||||| | ||| | ||| | Sbjct 137419 TGTTCGATTACGAGTACGAAGACTTCGAAATCACCGACTACGATCCTCATCCCCATATCA 137360 Query 123372 AGGCACCGGTGGCGATATGA 123391 |||| || || || ||||| Sbjct 137359 AGGCGCCTGTTGCCGTATGA 137340 Score = 107 bits (118), Expect = 3e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 122414 AAAGCAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGAC 122473 |||| ||||| || ||||| ||||| ||| |||| ||| ||||||||||| || Sbjct 138083 AAAGGGGACCGCACCGGCACCGGCACGAACTCGGTATTTGGCCACCAAATGCGCTTCGAT 138024 Query 122474 CTGCAAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCAT 122533 ||| | |||||||||||| |||| ||||| || | || |||| |||| | | Sbjct 138023 CTGTCGCAGGGTTTCCCGCTGATCACCACCAAGAAACTGCATACCCGCAGCATCTTTATT 137964 Query 122534 GAGCTTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTC 122593 ||| | |||||||| | || || |||| | | | ||| |||| | ||| Sbjct 137963 GAGTTGCTGTGGTTTTTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTA 137904 Query 122594 AGTATCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAA 122653 | |||||||| |||||||| || | || || ||||| |||||||| || ||| |||| Sbjct 137903 ACCATCTGGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGCAA 137844 Query 122654 TGGCGTGAGTGGCC 122667 |||||| ||||| Sbjct 137843 TGGCGTTCCTGGCC 137830 >seq122300 Length=38956 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 ||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 29285 TGTAGCTCAGTTGGT-TAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCC 29343 Query 169792 GTCAGTCCTGCCATT 169806 |||| || |||||| Sbjct 29344 GTCACTCGCGCCATT 29358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 775735705486400