Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq82194 154 1e-31 seq48326 145 5e-29 seq9079 143 2e-28 seq118618 134 9e-26 seq45273 104 2e-16 seq184460 95.1 8e-14 seq40474 91.5 1e-12 >seq82194 Length=16608 Score = 154 bits (170), Expect = 1e-31 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 |||| ||||||||||| || || ||||| || ||||||||||| ||||||||||| |||| Sbjct 10047 TAACGGATGCAGTAATCACAGTACCAGCTTACTTTAATGATTCCCAACGTCAAGCGACTA 10106 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848 ||||||| || | |||||| |||||||||||| |||||||||||||||||| || || | Sbjct 10107 AAGATGCAGGTAAAATTGCGGGTCTTAATGTTAAACGTATTATTAATGAACCTACCGCTG 10166 Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || | || ||||| | |||||||| Sbjct 10167 CTGCTTTGGCCTATGGAATGGATAAGAA 10194 Score = 113 bits (124), Expect = 3e-19 Identities = 200/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 |||| || || ||||| || |||| ||||||| | || || ||||||| || | | Sbjct 10818 TTGATGTCACGCCACTCTCTCTAGGAATTGAAACTTTAGGGGGCGTTATGACCAAATTAA 10877 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAA--AATCAAAAGTATTTTCCACTTATTCTGA 476001 |||| | |||||| | |||||| || ||||||| ||||||| || | | Sbjct 10878 TTGATAAAAATACCACAATCCCAACGAAGGCTAATCAAA--TATTTTCAACGGCTGAAAA 10935 Query 476002 TAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAA 476061 ||||||||| |||| || | || | || |||| || | | | || || || Sbjct 10936 TAATCAAACTGCTGTTACAGTTCATGTTTTACAAGGAGAGCGCGAGATGGCTTCAGCGAA 10995 Query 476062 TAACAAACTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTC 476120 ||| |||||| |||| | ||| | || |||||| || || || | || || || | Sbjct 10996 TAAATCGCTTGGACGTTTTGA-CTTAACAGATATTCCACCAGCACCGCGTGGTGTACCAC 11054 Query 476121 AAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTT 476167 |||||||||||||||||||||||||||| || ||||||||| ||||| Sbjct 11055 AAATTGAAGTTACTTTTGATATTGATGCTAACGGTATTCTTCATGTT 11101 >seq48326 Length=57257 Score = 145 bits (160), Expect = 5e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || ||||| ||||| ||||||||||| || || ||||||| || || Sbjct 52863 ACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGT 52804 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || | ||||| ||||| || || || || ||||| || || |||||||||||||| Sbjct 52803 ACGGT---CCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCC 52747 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| ||||| || |||||| ||||||||| ||| | | | ||| || Sbjct 52746 TTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATAGTGTCACTAGGCTCAACTTCGAG 52687 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| || ||||| ||||| || ||||| || Sbjct 52686 CGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTG 52648 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || || || || |||||||| || || || || || || |||| ||| || Sbjct 53318 CGGAGCCGCAGGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGATAGTGTG 53259 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||| || |||||||| || || || ||||| || ||||| |||||||| ||| Sbjct 53258 CGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCT 53199 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || |||||| |||||| |||||| || ||| || | ||| || Sbjct 53198 TCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACTTCGAGC 53139 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| ||||| || ||||| || Sbjct 53138 GTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTG 53101 Score = 95.1 bits (104), Expect = 8e-14 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || || ||||| ||||| ||||| || ||| |||| ||| || || |||| || | Sbjct 53546 CGCAGCCGGAGGACAAGGTGAAGGGTCGACTC-CTTTTGAATG-TTGTAGTCAGACAGGG 53489 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || || || || ||||| |||||||| || |||||||| ||||| | Sbjct 53488 TACGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGCTGCTGATCAGGTGGAATCC 53429 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||||||||| || || || || || ||||| || ||| | | || | Sbjct 53428 CTTCCTTGTCCTGGATTTTCGCCTTCACGTTCTCAATCGTGTCACTCGGCTCGACCTCCA 53369 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || |||||||| ||||||||||| Sbjct 53368 GGGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAAATTTG 53329 >seq9079 Length=83715 Score = 143 bits (158), Expect = 2e-28 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || ||||| ||||| ||||||||||| || || ||||||| || || Sbjct 3341 ACGAAGCCGTAGCACAAGGTGAAGGGTACTTTCTTTCTGAATGTTGTAATCAGACAGCGT 3400 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||| ||||| || || || || ||||| || || |||||||||||||| Sbjct 3401 ACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATTCC 3460 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| ||||| || |||||| |||||| || ||| | | | ||| || Sbjct 3461 TTCCTTGTCCTGAATTTTCGCCTTGACATTTTCAATGGTGTCACTCGGCTCAACTTCGAG 3520 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| || ||||| ||||| || ||||| || Sbjct 3521 CGTGATAGTTTTTCCCGTGAGTGTCTTCACAAAAATCTG 3559 Score = 116 bits (128), Expect = 2e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || || ||||| ||||| ||||| || ||| |||| ||| || || |||| || | Sbjct 2658 CGCAGCCGGAGGACAAGGTGAAGGGTCGACTC-CTTTTGAATG-TTGTAGTCAGACAGGG 2715 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || || || || ||||| ||||||||||| |||||||| || || | Sbjct 2716 TGCGGCCGTCTTCTAGCTGTTTGCCCGCAAAGATAAGACGTTGCTGATCAGGTGGGATCC 2775 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||||||||| || || ||| |||||| |||||| || ||| | | ||| | Sbjct 2776 CTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCAATGGTGTCACTAGGCTCGACTTCGA 2835 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||||||||| ||||| || ||||| || Sbjct 2836 GCGTGATGGTTTTACCGGTGAGTGTCTTGACAAAAATCTG 2875 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || ||||| || || ||||| || || || |||||| Sbjct 2952 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 3011 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| |||||| |||||| || || || ||| || || | ||| || || || Sbjct 3012 TCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCAACTTCTAGCGTGATC 3071 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || | |||||| ||||| || || Sbjct 3072 GTTTTGCCAGTCAAAGTCTTGACGAAGATCTG 3103 >seq118618 Length=1519 Score = 134 bits (148), Expect = 9e-26 Identities = 175/237 (74%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 474644 ACTAAACAATTTT--CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701 || ||| |||||| | || ||| |||| ||| | ||||||| |||||||||| ||| Sbjct 1223 ACGAAAAAATTTTTGCTCCCGAAGAAATCTCTGCCATGGTTTGT-CCAAAATGAAGGAAA 1281 Query 474702 CCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATT 474761 | ||| | || |||||| | |||||||| |||| || | || |||||||| |||| Sbjct 1282 CTGCGGAGGCTTACCTTGGAAAGAAAGTAACTCATGCTGTCGTGACAGTTCCAGCCTATT 1341 Query 474762 TTAATG-ATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 | || | || | ||||| || || || || ||||| |||| || |||||||| ||||| Sbjct 1342 TCAACGGATGCCCAACGCCAGGCCACCAAGGATGCTGGAACCATCGCAGGTCTCAATGTG 1401 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGC-ACTTGCTTATGGTCTTGATAAGAA 474876 | | ||||| |||||||| || || || || | |||| ||||||||||| || || Sbjct 1402 ATGAGGATTATCAATGAACCTACTGCTGCTGCGAATTGCATATGGTCTTGACAAAAA 1458 >seq45273 Length=11515 Score = 104 bits (114), Expect = 2e-16 Identities = 242/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || ||||| |||||||| || ||||| || ||||| || | || || | Sbjct 3791 AATCCAGACGAAGCCGTTGCATACGGCGCTGCGGTTCAAGCTGCCGTGTTGAGCGGAGAT 3850 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 ||| ||| | | | | || |||| |||||||| | || || || ||||| | Sbjct 3851 TCAAGCGACAGCATCCGTGACGTTCTACTGGTTGACGTGGCGCCGCTGTCGTTAGGCATA 3910 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 || || | || ||| | ||||| || | || | || | | |||||||||||| Sbjct 3911 GAGACGGCGGGCGGGGTCATGACCCGCATTGTGGAGCGCAACTCGCGCATCCCATGCAAA 3970 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 | || | || |||| || || || || ||| | | || ||||||||| | | Sbjct 3971 ACTTCGCAGACGTTCACCACATACTCCGACAACCAACCTGCAGTCACCATCCAAGTTTAC 4030 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | |||| ||||| || | | || || || || ||| | || Sbjct 4031 GAAGGTGAACGTGCTCTCACCAAAGACAACCATCTGTTGGGGACATTCAACCTTAACGGC 4090 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| || ||||||||||| ||||| || |||||||| || || || || || || ||| Sbjct 4091 ATTCCACCAGCTCCCAGAGGGGTTCCACAGATTGAAGTCACCTTCGACATGGACGCCAAT 4150 Query 476153 GGTAT 476157 || || Sbjct 4151 GGCAT 4155 >seq184460 Length=11861 Score = 95.1 bits (104), Expect = 8e-14 Identities = 191/282 (68%), Gaps = 1/282 (0%) Strand=Plus/Minus Query 475880 CTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAAT 475939 || |||||||| | || || ||||| || | || || | || ||| |||||||| Sbjct 8095 CTGGTTGACGTGGCGCCGCTGTCATTGGGCATCGAGAC-GCGGGCGGGGTTATGACTCGC 8037 Query 475940 CTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCT 475999 | | || | || ||| || |||||||| | || | ||| ||||||| || Sbjct 8036 ATCGTGGAGCGCAACTCTCGCATTCCATGCAAGACGTCGCAGACATTCACCACTTACTCC 7977 Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059 || || ||| | | || || ||||| | | ||||||||| | |||| ||||| Sbjct 7976 GACAACCAACCTGCAGTCACAATCCAGGTTTACGAAGGTGAACGTGCCCTCACCAAAGAC 7917 Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119 || || || ||||| || || || | || ||||| || ||||||||||| ||||| Sbjct 7916 AACCACCTTCTGGGAACATTCAACCTCAACGGCATTCCACCAGCTCCCAGAGGGGTTCCA 7857 Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTT 476161 || |||||||| || || || || || || ||||| || ||| Sbjct 7856 CAGATTGAAGTCACCTTCGACATGGACGCCAATGGCATCCTT 7815 Score = 95.1 bits (104), Expect = 8e-14 Identities = 146/202 (72%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 474677 ATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTG 474734 |||||||| |||| ||||| | || || ||| | || || ||| |||||| | | | Sbjct 8907 ATGGTTTTGACCAAGATGAAGGAGACGGCCGAGG-CGTACCTGGGA-AAGAAGGTGAGCG 8850 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 | || || || || || || || || || || |||||||| | || || || ||||||| Sbjct 8849 ACGCTGTCATCACGGTGCCCGCTTACTTCAACGATTCTCAGAGGCAGGCGACGAAAGATG 8790 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || || || ||||| || || | || || || || |||||| |||||||||| | Sbjct 8789 CCGGCGCTATCGCTGGTCTCAACGTGCTGCGCATCATCAACGAACCA-CAGCAGCCGCGC 8731 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || |||||||| Sbjct 8730 TTGCCTATGGCCTCGATAAGAA 8709 >seq40474 Length=22114 Score = 91.5 bits (100), Expect = 1e-12 Identities = 187/278 (67%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 475883 GTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTT 475942 |||||||| | || || ||||| || | || |||| || ||| ||||||| | Sbjct 21265 GTTGACGTGGCGCCGCTGTCATTGGGCATCGAGACAGCGGGCGGGGTTATGACGCGCATC 21206 Query 475943 ATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGAT 476002 | || | || ||| || |||||||| | || | || ||||||| || || Sbjct 21205 GTGGAGCGCAACTCTCGCATTCCATGCAAGACGTCGCAGACGTTCACCACTTACTCCGAC 21146 Query 476003 AATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAAT 476062 || ||| | |||| || ||||| | | ||||||||| | |||| ||||| || Sbjct 21145 AACCAACCTGCTGTCACAATCCAGGTTTACGAAGGTGAACGTGCCCTCACCAAAGACAAC 21086 Query 476063 AACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAA 476122 || || ||||| || || || | || ||||| || ||||||||||| ||||| || Sbjct 21085 CACCTTCTGGGAACATTCAACCTCAACGGCATTCCACCAGCTCCCAGAGGGGTTCCACAG 21026 Query 476123 ATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCT 476160 |||||||| || || || || || || || || || || Sbjct 21025 ATTGAAGTCACCTTCGACATGGACGCCAACGGCATCCT 20988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3259811100692432