Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq122308 132 1e-26 seq121306 132 1e-26 >seq122308 Length=32707 Score = 132 bits (146), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1127 TGGTACAAGACCGCGCGCTGGCAGCGGCTGCGGTGGTCGGTGCTGGTCCGGGATCTGTTC 1186 ||||| ||||| ||| |||||| |||||| | || | || ||||| ||||||||| Sbjct 29431 TGGTATAAGACGGCGAAGTGGCAGGCGCTGCGCTTCTCAATCCTCGTCCGTGATCTGTTC 29372 Query 1187 ACCTGC--GCGATGTGCGGGCGGGTCGAAGCGGACACCTCGCGGTTGGTGGCAGACCACA 1244 |||||| |||||| ||||||| | || || ||||||||| | |||| || || |||| Sbjct 29371 ACCTGCCAGCGATG--CGGGCGGCTTGAGGCTGACACCTCGAAGCTGGTCGCCGATCACA 29314 Query 1245 AGACGCCGCACCGGGGCGATGAGGCACTGTTCTGGGACGGGGGCAACCTGCAGTGCCTGT 1304 | ||||| || ||||||||||| ||||||||||| | | ||||| | ||| Sbjct 29313 GGCGTCCGCATCGCGGCGATGAGGCGCTGTTCTGGGATAGCGCGAACCTCTGGACGTTGT 29254 Query 1305 GCAAGCCGTGCCACGACAGCCTCAAGCAGCG 1335 ||||||| |||||||| || |||||||| Sbjct 29253 GCAAGCCCTGCCACGATGGCGCGAAGCAGCG 29223 >seq121306 Length=32618 Score = 132 bits (146), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 1127 TGGTACAAGACCGCGCGCTGGCAGCGGCTGCGGTGGTCGGTGCTGGTCCGGGATCTGTTC 1186 ||||| ||||| ||| |||||| |||||| | || | || ||||| ||||||||| Sbjct 29431 TGGTATAAGACGGCGAAGTGGCAGGCGCTGCGCTTCTCAATCCTCGTCCGTGATCTGTTC 29372 Query 1187 ACCTGC--GCGATGTGCGGGCGGGTCGAAGCGGACACCTCGCGGTTGGTGGCAGACCACA 1244 |||||| |||||| ||||||| | || || ||||||||| | |||| || || |||| Sbjct 29371 ACCTGCCAGCGATG--CGGGCGGCTTGAGGCTGACACCTCGAAGCTGGTCGCCGATCACA 29314 Query 1245 AGACGCCGCACCGGGGCGATGAGGCACTGTTCTGGGACGGGGGCAACCTGCAGTGCCTGT 1304 | ||||| || ||||||||||| ||||||||||| | | ||||| | ||| Sbjct 29313 GGCGTCCGCATCGCGGCGATGAGGCGCTGTTCTGGGATAGCGCGAACCTCTGGACGTTGT 29254 Query 1305 GCAAGCCGTGCCACGACAGCCTCAAGCAGCG 1335 ||||||| |||||||| || |||||||| Sbjct 29253 GCAAGCCCTGCCACGATGGCGCGAAGCAGCG 29223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129143328970408