Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq121920 87.8 2e-12 >seq121920 Length=6067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 250/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 ||| || || || ||||| | |||||||| ||||||||||| || | ||| || || Sbjct 4872 GCCCGGCACCGGCAAGACTTTGCTCGCCCGCGCCATCGCGGGCGAGGCTGGTGTGCCGTT 4813 Query 175374 CAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 | | ||| | || | | | ||||||| |||||||| || ||||| || || | | Sbjct 4812 CTTCACCATT--TCCGGCTCGGACTTTGTCGAGATGTTCGTCGGTGTCGGCGCGAGCCGC 4755 Query 175432 GTTCGCGATCTCTTTGAAATCGCCCGCGA--AAATC--AACCATGTATTGTCTTCATTGA 175487 || ||||| | || ||| | |||| ||||| || || || |||||||| || Sbjct 4754 GTGCGCGACATGTTCGAA----CAGGCGAAGAAATCCGCGCCCTGCATCGTCTTCATCGA 4699 Query 175488 TGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCA-GCAAATGACGAGA 175546 || || || ||||| ||| || || ||||||| | || | | ||||||||| Sbjct 4698 CGAAATCGACGCGGTCGGCCGTCATCGTGGCGCTGG-CCTCGGCAACGGTAATGACGAGC 4640 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGAGACTG 175603 | || || || | || || || ||| ||||||||| || || || |||||| | Sbjct 4639 GCGAGCAGACGCTGAACCAGCTTCTCGTCGAGATGGACGGGTTCGAGGCGAATGAG---G 4583 Query 175604 GCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCC 175663 |||| | | || || ||||| || ||| || | || ||| ||| | || || | Sbjct 4582 GCATCATCATCATCGCCGCCACCAACCGCCCCGACGTGCTCGATCCCGCGTTGCTGCGGC 4523 Query 175664 CGGGTCGTTTTGATCG 175679 ||||||| || || || Sbjct 4522 CGGGTCGCTTCGACCG 4507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595114835201920