Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020856.2 Length=40931 Score E Sequences producing significant alignments: (Bits) Value seq121819 205 2e-48 >seq121819 Length=11006 Score = 205 bits (226), Expect = 2e-48 Identities = 423/623 (68%), Gaps = 10/623 (2%) Strand=Plus/Plus Query 36962 GACCATTATGAACACATCTGGGAAGGCGGGTTCGTAACCGTTGTCGAGGGCGCATATTAC 37021 ||||| || ||||| |||||||| || || | || ||||| |||| || || |||||| Sbjct 1894 GACCAGTACGAACATATCTGGGAGGGTGGATACGCCACCGTGATCGACGGAGCGTATTAC 1953 Query 37022 GCCAAGGCAATCACGGTAGCGCGGTCTGAGAACAGAATAGGCCACGTCGCTGCCGATCCT 37081 |||||| | ||||||| | || ||| || ||| |||| | ||||| || Sbjct 1954 GCCAAGAGCCTGTCGGTAGCCAGAGAACAGGGCAGGATCGGCAACGTGTCAGCCGACCCG 2013 Query 37082 TTGATGACCATTCGTGCGGTCTGGGACATTGGCGGCACGGG-GCAGAAGTCAGACGCAAC 37140 ||||||| || ||| | | |||||||| || ||||| || ||| | ||||| Sbjct 2014 CTGATGACGTACCGCGCGATATTCGACATTGGGGGTACGGGAGCCAAAG-CTGACGCGGT 2072 Query 37141 CGCAATCTGGATTGTCCAGTACGTCGGACGCGAAATTCGCCTGCTGAACTACTACGAGGC 37200 || || ||| | | |||| |||| || || || || | |||||||| |||||||| Sbjct 2073 GGCTATATGGGTCGCTCAGTTTATCGGGCGAGAGATACGAGTCCTGAACTATTACGAGGC 2132 Query 37201 GCAGGGGCAACCTCTGGCGGCGCATATCGAGTGGCTGCGGGCAAACGGATACGGGGCGGC 37260 || || ||||| || |||| || | |||||||| | | |||||||| | || Sbjct 2133 TGTTGGCCAGCCTCTAGCAACGCACGTCAACTGGCTGCGCGAGCATGGATACGGCGGCGC 2192 Query 37261 GCTCTGCGTATTGCCCCACGATGGCAGCACTAACGACAAGGTGCATGACGTATCATTCGA 37320 || ||| |||| ||||| || | || ||||||||||| ||| || || | ||| Sbjct 2193 GCAAATCGTTCTGCCGCACGACGGAACGACCAACGACAAGGTTTTTGATGTGTCCTACGA 2252 Query 37321 GAGCGCACTACGGGCCGCAGGGTTCGAAGTGCAGGTCGTTAAGAACCAAGGGGCGGGTGC 37380 ||||| | | || || || || || || ||| | ||||| || |||||| Sbjct 2253 AAGCGCGTTGAGAGCAGCGGGCTTTGAGGTCACGGTGATCCCCAACCAGGGTAAGGGTGC 2312 Query 37381 GGCAATGCAGCGCGTAGAGGCGGCACGGCGTCTATTCCCCAGCATGTGGTTCAACCAAGC 37440 ||| | |||| |||||||||| ||||| ||||||| || ||||||||| ||| Sbjct 2313 GGCGGCGATGCGCATAGAGGCGGCGCGGCGGTTATTCCCTTCGATCTGGTTCAACAAAGA 2372 Query 37441 GACGA-CAGAGGCCGGCTTGGACGCGATCGGCTGGTATCACGAAAAGCGC---GACGAAG 37496 || | || |||| ||||| ||||| | ||||||||||||||| ||| ||||| | Sbjct 2373 CACAACCACAGGCGGGCTT-GACGCATTGGGCTGGTATCACGAA---CGCAAAGACGAGG 2428 Query 37497 AACGCGGCATCGGCTTAGGGCCAAGCCATGACTGGTCAAGTCACGGCGCTGACGCCTTCG 37556 ||| |||||| | || || ||||| ||| | || || || || || |||| Sbjct 2429 CGCGCAATATCGGCCTTGGACCGGAACATGATTGGGCCTCGCATGGTGCCGATGCTTTCG 2488 Query 37557 GGCTGGTGGCTGTTGCCTATGAG 37579 | || || |||||||||||| Sbjct 2489 GCTTGATGTGCGTTGCCTATGAG 2511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130554452339544