Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020858.2 Length=40929 Score E Sequences producing significant alignments: (Bits) Value seq121819 205 2e-48 >seq121819 Length=11006 Score = 205 bits (226), Expect = 2e-48 Identities = 423/623 (68%), Gaps = 10/623 (2%) Strand=Plus/Minus Query 9788 CTCATAGGCAACAGCCACCAGCCCGAAGGCGTCAGCGCCGTGACTTGACCAGTCATGGCT 9847 |||||||||||| || || ||||| || || || || || | ||| ||||| Sbjct 2511 CTCATAGGCAACGCACATCAAGCCGAAAGCATCGGCACCATGCGAGGCCCAATCATGTTC 2452 Query 9848 TGGCCCTAAGCCGATGCCGCGTTCTTCGTC---GCGCTTTTCGTGATACCAGCCGATCGC 9904 || || | |||||| ||| | ||||| ||| ||||||||||||||| | || Sbjct 2451 CGGTCCAAGGCCGATATTGCGCGCCTCGTCTTTGCG---TTCGTGATACCAGCCCAATGC 2395 Query 9905 GTCCAAGCCGGCCTCTG-TCGTCGCTTGGTTGAACCACATGCTGGGGAATAGACGCCGTG 9963 ||| ||||| |||| || | || ||| ||||||||| || ||||||| ||||| | Sbjct 2394 GTC-AAGCCCGCCTGTGGTTGTGTCTTTGTTGAACCAGATCGAAGGGAATAACCGCCGCG 2336 Query 9964 CCGCCTCTACGCGCTGCATTGCCGCACCCGCCCCTTGGTTCTTAACGACCTGCACTTCGA 10023 ||||||||| |||| | ||||||||| || ||||| | ||| || || | Sbjct 2335 CCGCCTCTATGCGCATCGCCGCCGCACCCTTACCCTGGTTGGGGATCACCGTGACCTCAA 2276 Query 10024 ACCCTGCGGCCCGTAGTGCGCTCTCGAATGATACGTCATGCACCTTGTCGTTAGTGCTGC 10083 | || || || | | ||||| ||| | || || ||| ||||||||||| || | | Sbjct 2275 AGCCCGCTGCTCTCAACGCGCTTTCGTAGGACACATCAAAAACCTTGTCGTTGGTCGTTC 2216 Query 10084 CATCGTGGGGCAATACGCAGAGCGCCGCCCCGTATCCGTTTGCCCGCAGCCACTCGATAT 10143 | ||||| |||| ||| |||| | |||||||| | | |||||||| | || | Sbjct 2215 CGTCGTGCGGCAGAACGATTTGCGCGCCGCCGTATCCATGCTCGCGCAGCCAGTTGACGT 2156 Query 10144 GCGCCGCCAGAGGTTGCCCCTGCGCCTCGTAGTAGTTCAGCAGGCGAATTTCGCGTCCGA 10203 ||| || ||||| || || |||||||| |||||||| | || || || || |||| Sbjct 2155 GCGTTGCTAGAGGCTGGCCAACAGCCTCGTAATAGTTCAGGACTCGTATCTCTCGCCCGA 2096 Query 10204 CGTACTGGACAATCCAGATTGCGGTTGCGTCTGACTTCTGC-CCCGTGCCGCCAATGTCC 10262 |||| | | ||| || || ||||| | ||| || ||||| || |||||||| Sbjct 2095 TAAACTGAGCGACCCATATAGCCACCGCGTCAG-CTTTGGCTCCCGTACCCCCAATGTCG 2037 Query 10263 CAGACCGCACGAATGGTCATCAAAGGATCGGCAGCGACGTGGCCTATTCTGTTCTCAGAC 10322 | | ||| || ||||||| || ||||| | |||| ||| || ||| || Sbjct 2036 AATATCGCGCGGTACGTCATCAGCGGGTCGGCTGACACGTTGCCGATCCTGCCCTGTTCT 1977 Query 10323 CGCGCTACCGTGATTGCCTTGGCGTAATATGCGCCCTCGACAACGGTTACGAACCCGCCT 10382 | ||||||| | |||||||||||| || || |||| ||||| || | || || Sbjct 1976 CTGGCTACCGACAGGCTCTTGGCGTAATACGCTCCGTCGATCACGGTGGCGTATCCACCC 1917 Query 10383 TCCCAGATGTGTTCATAATGGTC 10405 |||||||| ||||| || ||||| Sbjct 1916 TCCCAGATATGTTCGTACTGGTC 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130548067165928