Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq121315 86.0 2e-12 >seq121315 Length=19324 Score = 86.0 bits (94), Expect = 2e-12 Identities = 178/270 (66%), Gaps = 25/270 (9%) Strand=Plus/Plus Query 39983 CGCAGAAGGCGTTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTCGCAAAGATCTGCC 40042 |||||| ||||| | ||||||||| ||||| |||||| || ||| || | |||| Sbjct 11632 CGCAGATAGCGTTTGTGTTGAAGCAGGCGGAGGACGGCACGACGATCGGCGAGGTATGCC 11691 Query 40043 GCAAGGCCGGGATCAGCTAGGCGGCCTACTTCAACTGG---AAGAAGC------------ 40087 ||||||| ||||||||| | ||| | | | ||| |||||| Sbjct 11692 GCAAGGCGGGGATCAGCGACGCGACATTTTATGCGTGGCGCAAGAAGTACGCCGGGCTGA 11751 Query 40088 ----------GATATGGCGGCTAAAGCAGCTTGAGGACGAGAATGCCCGACTGAAGAAGA 40137 ||| ||||||| ||||| ||||| ||||| || |||||| | Sbjct 11752 TGCCGTCGGAGATGCGGCGGCTGCGCCAGCTCGAGGATGAGAACGCGAAGCTGAAGCGGC 11811 Query 40138 TCGTGGCCGACCTGACGCTCGACCGCGAGATGTTGAAGGACGTCATCCGCCGAAAACTCT 40197 | || || |||||| |||||||| | ||||||| |||| || || ||||| |||| Sbjct 11812 TGGTTGCTGACCTGTCGCTCGACAAGGCGATGTTGCAGGATGTTGTCTCGCGAAAGCTCT 11871 Query 40198 GAGGCCTTTCCGGAAGCGACAGCTCGTCGA 40227 ||||||| ||| ||| ||||||||||| Sbjct 11872 GAGGCCTGATCGGCGGCGCCAGCTCGTCGA 11901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128319641573944