Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq195083 105 2e-18 >seq195083 Length=147271 Score = 105 bits (116), Expect = 2e-18 Identities = 146/197 (74%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 5 GGCGACCTCGCAGATTCTCGC--TATTTATGAAAATTTTCAGGCATTTGCCGTTTCCGTT 62 |||||| |||| | || |||| ||||||||||||||||| || | | |||||||||| Sbjct 53760 GGCGAC-TCGCGGGTTTTCGCCGTATTTATGAAAATTTTCCGGTTTAAGGCGTTTCCGTT 53818 Query 63 CTTCTTCTCGCTAATTCATTGTTTTAACTGTAAACACCCCCTGAAAAGAAAGGAAATGAT 122 ||||||| ||| | | |||||| | | ||| |||| |||||||||||||||| || Sbjct 53819 CTTCTTCGTCATAACTTAATGTTTTTA-TTAAAATACCCTCTGAAAAGAAAGGAAACGAC 53877 Query 123 AAGCCTTAAAAACG-GCTAAATAGCCAGAGGGCGTTTCCTTTCTCTGTTTTTGTGTATGG 181 | | | ||| || ||| | ||| | || ||||||||||||||||||| ||| Sbjct 53878 AGGTGCTGAAAGCGAGCTTTTTGGCC-TCTGTCG-TTCCTTTCTCTGTTTTTGTCCGTGG 53935 Query 182 AGTGAGCTATGGAGGTC 198 | ||| | ||||| ||| Sbjct 53936 AATGAACAATGGAAGTC 53952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147216562890496