Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9079 86.0 1e-11 >seq9079 Length=83715 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | |||||| | || || |||| || | |||||| ||| || || ||| Sbjct 2877 ATGCCGCCGCGAAGTCGCAGCACCAAGTGTAGGGTGGACTCTTTCTGAATGTTGTAGTCT 2936 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || || || ||||| || | | ||| ||||||||| Sbjct 2937 GAGAGTGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGT 2996 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| || || || || || | ||| Sbjct 2997 GGGATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATCGTGTCACTGGGTTCA 3056 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || ||||| ||||| || || || | ||| |||||||| Sbjct 3057 ACTTCTAGCGTGATCGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 3106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902928780607200