Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq121339 163 9e-36 seq115184 118 3e-22 >seq121339 Length=12531 Score = 163 bits (180), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 40468 CGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGG 40527 |||| |||||||||| | || ||| || ||||||||| |||| ||| ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 40528 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGT 40587 | ||||||||||| || ||||| |||||||| | || ||| | | ||| ||||||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 40588 CGGTGATCCCGAG-GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCG 40646 |||| || || ||| | || |||| ||||||||| | || || ||||| || ||| Sbjct 121 CGGTAATGGTCAGCGACC-ATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCG 179 Query 40647 ACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40706 ||| || | || ||||| ||||| ||||||||| || |||| |||||||| Sbjct 180 ACCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCG 239 Query 40707 GGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGC 40755 |||||||||||||||||||| | || | |||| ||| | | |||||| Sbjct 240 GGGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGC 288 >seq115184 Length=93111 Score = 118 bits (130), Expect = 3e-22 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||| | ||| | || ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 40562 GA-GTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAAC 40620 | ||| || | || || || || || || ||||| | | |||||| ||||| |||| Sbjct 87047 CAAGTCATAGCGCAAG-GGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAAC 87105 Query 40621 CGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGA 40680 | ||| | || || || || || || || ||||| || | ||| ||||| |||| Sbjct 87106 CCGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGA 87165 Query 40681 AGTCCGCGACGACGAGGAAGTACGACGGG-AAGCCCAT 40717 ||||||| |||| |||||||| | |||| |||||||| Sbjct 87166 AGTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCAT 87202 Score = 87.8 bits (96), Expect = 6e-13 Identities = 204/304 (67%), Gaps = 14/304 (5%) Strand=Plus/Plus Query 39361 ACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCG 39420 ||||||| || | ||| | || ||||| ||||| | || || ||||| |||| || | Sbjct 85873 ACTCGGCCGGATGGTGGGCTTTAAGCCAGGCCGTCTGATAGGCAATGAGAGCGTAAGCAG 85932 Query 39421 CCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCT 39480 | ||||| |||||| ||| | ||||| || ||| ||| || ||| ||| || Sbjct 85933 CGGAGTGACTCTTGTTAAAGCCATAGCCTGCAAACTTTTCCATCAGGTCAAACAG---CT 85989 Query 39481 GGATGGCACCGTCCGAGTAG---CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACT 39537 || || || | || | ||| || | ||| || | || || || |||| Sbjct 85990 TGACCGCCAATTCAGGGTCGTGGCCTTTCTTGACCGCCCCTTCCTCAAA---CA-GAACC 86045 Query 39538 C----CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCC 39593 | |||||||| |||||||||| ||||||||||| || || || |||| |||||| Sbjct 86046 CGGTGCTTGGCCATCTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCA 86105 Query 39594 TGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATG 39653 ||| || | ||| || | || | ||||| | | | |||||| |||||||||| | Sbjct 86106 CCACCCAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACG 86165 Query 39654 ATGA 39657 |||| Sbjct 86166 ATGA 86169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163505140784912