Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq121339 163 9e-36 seq115184 113 1e-20 >seq121339 Length=12531 Score = 163 bits (180), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 40756 CGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGG 40815 |||| |||||||||| | || ||| || ||||||||| |||| ||| ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 40816 ACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGT 40875 | ||||||||||| || ||||| |||||||| | || ||| | | ||| ||||||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 40876 CGGTGATCCCGAG-GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCG 40934 |||| || || ||| | || |||| ||||||||| | || || ||||| || ||| Sbjct 121 CGGTAATGGTCAGCGACC-ATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCG 179 Query 40935 ACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40994 ||| || | || ||||| ||||| ||||||||| || |||| |||||||| Sbjct 180 ACCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCG 239 Query 40995 GGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGC 41043 |||||||||||||||||||| | || | |||| ||| | | |||||| Sbjct 240 GGGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGC 288 >seq115184 Length=93111 Score = 113 bits (124), Expect = 1e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||| | ||| | || ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 40850 GAGCCCGT-GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAAC 40908 | | | || | || || || || || || ||||| | | |||||| ||||| |||| Sbjct 87047 CAAGTCATAGCGCAAG-GGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAAC 87105 Query 40909 CGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGA 40968 | ||| | || || || || || || || ||||| || | ||| ||||| |||| Sbjct 87106 CCGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGA 87165 Query 40969 AGTCCGCGACGACGAGGAAGTACGACGGG-AAGCCCAT 41005 ||||||| |||| |||||||| | |||| |||||||| Sbjct 87166 AGTCCGCCACGATCAGGAAGTA-GCCGGGAAAGCCCAT 87202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164462916827312