Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq121339 154 5e-33 seq115184 109 2e-19 >seq121339 Length=12531 Score = 154 bits (170), Expect = 5e-33 Identities = 209/289 (72%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 40216 CGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGG 40275 |||| |||| ||||| | || ||| || ||||||||| |||| ||| ||||| | Sbjct 1 CGTAGCGGATCACCTCCACGCGCCGCGTTTCGCAGAAGTCGATATCGAAATCCGGCATCG 60 Query 40276 ACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGT 40335 | ||||||||||| || |||||||||||||| | || ||| | | ||| ||||||| Sbjct 61 AGACGCGCTCGGGATTGAGGAAGCGCTCGAACAGCAGGCCGAGGCGGATCGGATCGAGGT 120 Query 40336 CGGTGATCCCGAG-GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCG 40394 |||| || || ||| | || |||| ||||||||| | || || ||||| || ||| Sbjct 121 CGGTAATGGTCAGCGACC-ATGCCACCACCGAACCGGCGCCCGAACCGCGCCCCGGCCCG 179 Query 40395 ACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGAC 40454 ||| || || ||||| ||||| ||||||||| || |||| |||||||| Sbjct 180 ACCGGGATGTCGCGTTCCTTGGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTATCCG 239 Query 40455 GGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGC 40503 ||||| |||||||||||||| | || | |||| ||| | | |||||| Sbjct 240 GGGAAGCCCATCTGGATGATGACATCCAGCTCGAACTCCAACCGCTTGC 288 >seq115184 Length=93111 Score = 109 bits (120), Expect = 2e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||| | ||| | || ||||||||||| ||||| ||||||||||| || ||||| | Sbjct 86987 GAAGTCCACGTCAAAGTCAGGCATGGACACCCGCTCAGGGTTCAGGAAACGTTCGAACAG 87046 Query 40310 GAGCCCGT-GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAAC 40368 | | | || | || || || || || || ||||| | | |||||| ||||| |||| Sbjct 87047 CAAGTCATAGCGCAAG-GGATCCAGATCAGTAATCCCCATGCTGTAGGCCACCAGGGAAC 87105 Query 40369 CGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGA 40428 | ||| | || ||||| || || || || || || || | ||| ||||| |||| Sbjct 87106 CCGCCCCCGAACCCCGACCCGGCCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGA 87165 Query 40429 AGTCCGCGACGACGAGGAAGTACGACGGGAA 40459 ||||||| |||| |||||||| | |||||| Sbjct 87166 AGTCCGCCACGATCAGGAAGTA-GCCGGGAA 87195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162946438093512