Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq115183 95.1 2e-14 >seq115183 Length=152922 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 ||||| ||||| || |||||| || | || |||||||| ||||| ||| | || Sbjct 138077 GACCGCACCGGCACCGGCACGAACTCGGTATTTGGCCACCAAATGCGCTTCGATCTGTCG 138018 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGCGT-TGCC-ACCTGC-GC-TCTATTATCCATGA 99067 | |||||||||||| | || |||||| ||| ||| || || ||| |||| ||| Sbjct 138017 CAGGGTTTCCCGCTGATCACCACCAAGAAACTGCATACCCGCAGCATCT-TTAT---TGA 137962 Query 99068 ACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAAC 99127 |||||||||| || || || ||||| | | | ||| |||| || ||||| Sbjct 137961 GTTGCTGTGGTTTTTGCGTGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTAAC 137902 Query 99128 CATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTG 99187 ||| |||||||||||||| ||||| | ||| | || || ||||| || ||| ||| || Sbjct 137901 CATCTGGGACGAATGGGCCGACAAGGACGGCAATCTGGGCCCGGTCTATGGTGTGCAATG 137842 Query 99188 GCG 99190 ||| Sbjct 137841 GCG 137839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714889245331360