Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhipicephalus_20microplus_20[genbank_20GCA_5F002176555.1_202017-06- 07] 195,084 sequences; 2,008,371,944 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq122298 197 5e-46 seq121302 197 5e-46 seq121807 150 6e-32 seq121347 150 6e-32 seq121570 118 4e-22 >seq122298 Length=39529 Score = 197 bits (218), Expect = 5e-46 Identities = 257/353 (73%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 31452 CCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGT 31511 || ||| ||| ||||||||||| |||| ||||||||| | || || |||||||| | | Sbjct 37545 CCCGACCGTCCAGCATGGTCAGGGTCGAATTGAAGCCTTGCAGGACAACTTCGGTCGAAT 37486 Query 31512 AGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAA 31571 | ||||| || || || ||||||||| |||||||||||| ||| || | || | Sbjct 37485 AACGATCCTTGCCATCCTTGTCCTGCCACTTTCGGGTTTGCAGCGCGCCTTCAAGATAGA 37426 Query 31572 CCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGA 31631 ||||||| ||||||||||| ||||||||| | |||| |||| ||||| | || | | Sbjct 37425 CCTTCGAACCCTTTTTCAGATATTGCTCGGCCAGCTTGGCGAGCCCTTCCGAAAAAATCA 37366 Query 31632 CGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTT 31691 | |||| ||||| ||||||||||| ||||| || |||||||| |||||||| | | Sbjct 37365 CAACGCGGTGCCATTCGGTGCGCTCTTTGCGTTCACCGCTGTCTTTATCGCGCCATGTGT 37306 Query 31692 CGGAAGTCGCAAGGCGA-AGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCC 31750 || || || | ||| ||| | || || ||| | || ||| |||||| Sbjct 37305 TCGACGTGGCGA-CCGACAGGTTCGCAATCGGTTTGCCGTCCTGCGTCCGCTTGATTTCA 37247 Query 31751 GGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 || ||||| ||||||| ||||| || |||||||| |||||||| || | ||| Sbjct 37246 GGGTCGGCCCCGAGATTGCCGACGAGGATGACTTTATTGACGCTTCCCGACAT 37194 >seq121302 Length=39529 Score = 197 bits (218), Expect = 5e-46 Identities = 257/353 (73%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 31452 CCTGACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGT 31511 || ||| ||| ||||||||||| |||| ||||||||| | || || |||||||| | | Sbjct 1985 CCCGACCGTCCAGCATGGTCAGGGTCGAATTGAAGCCTTGCAGGACAACTTCGGTCGAAT 2044 Query 31512 AGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAA 31571 | ||||| || || || ||||||||| |||||||||||| ||| || | || | Sbjct 2045 AACGATCCTTGCCATCCTTGTCCTGCCACTTTCGGGTTTGCAGCGCGCCTTCAAGATAGA 2104 Query 31572 CCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGA 31631 ||||||| ||||||||||| ||||||||| | |||| |||| ||||| | || | | Sbjct 2105 CCTTCGAACCCTTTTTCAGATATTGCTCGGCCAGCTTGGCGAGCCCTTCCGAAAAAATCA 2164 Query 31632 CGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTT 31691 | |||| ||||| ||||||||||| ||||| || |||||||| |||||||| | | Sbjct 2165 CAACGCGGTGCCATTCGGTGCGCTCTTTGCGTTCACCGCTGTCTTTATCGCGCCATGTGT 2224 Query 31692 CGGAAGTCGCAAGGCGA-AGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCC 31750 || || || | ||| ||| | || || ||| | || ||| |||||| Sbjct 2225 TCGACGTGGCGA-CCGACAGGTTCGCAATCGGTTTGCCGTCCTGCGTCCGCTTGATTTCA 2283 Query 31751 GGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 || ||||| ||||||| ||||| || |||||||| |||||||| || | ||| Sbjct 2284 GGGTCGGCCCCGAGATTGCCGACGAGGATGACTTTATTGACGCTTCCCGACAT 2336 >seq121807 Length=11772 Score = 150 bits (166), Expect = 6e-32 Identities = 256/365 (70%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 31444 GCCACCGCCCTGACTG---TCGAGCATGGTCAGCGTCGCA-TTGAAGCCGTTCAACACCA 31499 |||||||||| | | |||||||| |||||| ||| |||||||| | |||||| | Sbjct 2295 GCCACCGCCCGGCGCGCCATCGAGCATCGTCAGCA-CGCTGTTGAAGCCCTGCAACACGA 2353 Query 31500 CTTCGGTTGTGTAGCGATCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTG 31558 |||||| | ||||| || || | | || | ||||||||| || || || |||| | Sbjct 2354 TTTCGGTCGAATAGCGGTCCTGGCCCTGCTGA-TCCTGCCACTTACGCGTCTGGAGCTGG 2412 Query 31559 CCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCT 31618 |||||||| || |||||||||||||| ||| | |||| || || |||| || Sbjct 2413 CCCTCGATATAGACCTTCGATCCCTTGCGCAGAAAACGCTCCGCGACGTTTGCGAGCCCC 2472 Query 31619 TCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGG 31678 ||| |||||| |||| |||||| ||||||||||||||||| |||||||||| ||| Sbjct 2473 TCGTTGAAGATCGCGACCGAATGCCATTCGGTGCGCTCCTTGCGCTCGCCGCTGTTGCGA 2532 Query 31679 TCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTC 31738 || ||| |||| || || || | ||| ||| | | | | || || || | Sbjct 2533 TCCTTCCACGTTTCCGACGTGGCGATGCGCAGGTTCACCACCTTGCCGCCATTCTGGAAC 2592 Query 31739 TTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCG 31798 | || ||| || || ||||||| ||||| ||||| || ||||| ||||| || Sbjct 2593 GTGCGCGATTCGGGGTCACGCCCGAGATTGCCGACGAGAATTACCTTGTTAACGCTGCCT 2652 Query 31799 GCCAT 31803 ||||| Sbjct 2653 GCCAT 2657 >seq121347 Length=11177 Score = 150 bits (166), Expect = 6e-32 Identities = 256/365 (70%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTG---TCGAGCATGGTCAGCGTCGCA-TTGAAGCCGTTCAACACCA 31499 |||||||||| | | |||||||| |||||| ||| |||||||| | |||||| | Sbjct 9479 GCCACCGCCCGGCGCGCCATCGAGCATCGTCAGCA-CGCTGTTGAAGCCCTGCAACACGA 9421 Query 31500 CTTCGGTTGTGTAGCGATCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTG 31558 |||||| | ||||| || || | | || | ||||||||| || || || |||| | Sbjct 9420 TTTCGGTCGAATAGCGGTCCTGGCCCTGCTGA-TCCTGCCACTTACGCGTCTGGAGCTGG 9362 Query 31559 CCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCT 31618 |||||||| || |||||||||||||| ||| | |||| || || |||| || Sbjct 9361 CCCTCGATATAGACCTTCGATCCCTTGCGCAGAAAACGCTCCGCGACGTTTGCGAGCCCC 9302 Query 31619 TCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGG 31678 ||| |||||| |||| |||||| ||||||||||||||||| |||||||||| ||| Sbjct 9301 TCGTTGAAGATCGCGACCGAATGCCATTCGGTGCGCTCCTTGCGCTCGCCGCTGTTGCGA 9242 Query 31679 TCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTC 31738 || ||| |||| || || || | ||| ||| | | | | || || || | Sbjct 9241 TCCTTCCACGTTTCCGACGTGGCGATGCGCAGGTTCACCACCTTGCCGCCATTCTGGAAC 9182 Query 31739 TTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCG 31798 | || ||| || || ||||||| ||||| ||||| || ||||| ||||| || Sbjct 9181 GTGCGCGATTCGGGGTCACGCCCGAGATTGCCGACGAGAATTACCTTGTTAACGCTGCCT 9122 Query 31799 GCCAT 31803 ||||| Sbjct 9121 GCCAT 9117 >seq121570 Length=2833 Score = 118 bits (130), Expect = 4e-22 Identities = 177/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 31458 TGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAA-CACCACTTCGGTTGTGTAGCGA 31516 ||||||||| ||||||| | ||||| | | | | |||||| ||||| | |||| Sbjct 2011 TGTCGAGCAAGGTCAGCACGGAGTTGAA-CGGCCCGATCACCACCTCGGTCGACCAGCGG 1953 Query 31517 TCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTT 31575 ||| || | | || | |||||| |||||||| | |||| |||||||| || ||||| Sbjct 1952 TCATTGCCCTGCTGA-TCCTGCCATTTGCGGGTCCGAAGCTGCCCCTCGATATAGACCTT 1894 Query 31576 CGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGAC 31635 ||||||||| ||| ||||||| | ||||| || || ||||| | | ||| || || Sbjct 1893 CGATCCCTTGCGCAGATATTGCTTGGCGACCTTCACCAGCGCTTCGTTCATGACAACAAC 1834 Query 31636 GCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGA 31695 | ||||| |||||||||||| | | || |||||| |||| || ||||| |||| Sbjct 1833 ATTGTGCCATTCGGTGCGCTCCCTTTGCTCACCGCTGGCGCGATCCTTCCAGCGTTCGCC 1774 Query 31696 AGTCGC 31701 ||||| Sbjct 1773 GGTCGC 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169411426379712